PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G14510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25556.8 Da PI: 6.4936 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.6 | 1.4e-40 | 63 | 162 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCkvlrr+Ca++Cvlapyfp ++p kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq++ ++lk++l ONIVA03G14510.1 63 PCAACKVLRRRCADGCVLAPYFPPTEPTKFTTAHRVFGASNIIKLLQELPESARADAVSSMVYEAEARLRDPVYGCAGAVCRLQKEANELKVQL 156 7********************************************************************************************* PP DUF260 95 allkee 100 a++++ ONIVA03G14510.1 157 ARAQAD 162 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.274 | 62 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-40 | 63 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDHAGNTVAN VTVAQQPHYG RSVSPPSRVS SCSPPPPPVG TASLLVGNTS SSSSPTTTVV 60 LSPCAACKVL RRRCADGCVL APYFPPTEPT KFTTAHRVFG ASNIIKLLQE LPESARADAV 120 SSMVYEAEAR LRDPVYGCAG AVCRLQKEAN ELKVQLARAQ ADLLNARAQH DNLVALVCVE 180 LAHRRRDDDQ QLEYQAPAPP LPHPAEYCSG GAGFGATVYQ PFYDSDLDSA AWGEPQLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-42 | 53 | 165 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-42 | 53 | 165 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072515 | 0.0 | AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629326.1 | 1e-176 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 2e-60 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0E0GKZ6 | 1e-175 | A0A0E0GKZ6_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1PA85 | 1e-175 | I1PA85_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q10N09 | 1e-175 | Q10N09_ORYSJ; LOB domain protein 1, putative, expressed | ||||
STRING | OS03T0287400-01 | 1e-175 | (Oryza sativa) | ||||
STRING | ONIVA03G14510.1 | 1e-175 | (Oryza nivara) | ||||
STRING | ORGLA03G0128100.1 | 1e-175 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-59 | LOB domain-containing protein 1 |