PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G10680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 250aa MW: 27382.7 Da PI: 8.2372 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 43.2 | 8.6e-14 | 82 | 123 | 1 | 50 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 k+r++W+peLH+rFv +++L G++ lmkv+gLt ++vkSHL ONIVA03G10680.1 82 KARRCWSPELHRRFVATLQRLDGPQ--------GLMKVDGLTDDEVKSHL 123 68*******************9998........79**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.42E-6 | 80 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 80 | 123 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-11 | 82 | 125 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSISNHHVSN AFMPLATSPV FAKSPEKAAT ATPLPAAVPD LSLSSPACPA APASVTSSAV 60 TDVARVQRRR QQQQQQQAVQ RKARRCWSPE LHRRFVATLQ RLDGPQGLMK VDGLTDDEVK 120 SHLHVVQSQL LLLQPKKIAI CRWQQFDTPL LEKKNSRISK QIVKKYRLHT RRASDCGGDS 180 GGLWTPPPEQ YTTSQHNMSP ALTVSSSHAV SVTAGDSCDG GEEEEEEEDD GKSESYSWEM 240 QNGARASLSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879396.1 | 7e-77 | LOW QUALITY PROTEIN: transcription factor HHO2-like | ||||
TrEMBL | A0A0E0GJJ4 | 0.0 | A0A0E0GJJ4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G10680.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-12 | G2-like family protein |