PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G10380.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 420aa MW: 44367.1 Da PI: 10.3819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G10380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	7e-07	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H ONIVA03G10380.1 79 YVCEICGQGFQREQNLQMHRRRH 101 9*********************9 PP
2	zf-C2H2	10.8	0.0015	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ ONIVA03G10380.1 179 WVCARCAKGYAVQSDYKAHLKTC 201 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.62E-7	78	101	No hit	No description
SMART	SM00355	6.5E-4	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.759	79	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	143	173	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.62E-7	174	199	No hit	No description
SMART	SM00355	270	179	206	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD 60 PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR PAAATAAEDG 120 GAAGGGGGAG GGAGGGGARK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV 180 CARCAKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RVRGEVVPVA 240 TTLPVIPPPG VHHGAVGRRV LVQLHDHHDH RLLPRATRQQ AITMNLQLSI GPAAVVAAAS 300 GGGGACAAAA GGEEEQQREE VRRALEEKTA ADAARERARE EAAAAERALE DARRARHRAR 360 GELEKALALR DHAARLIAQV TCHACRQRSL AVMSMAAIDG HGASAVAREH LRGGGVGAGI

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD  60
PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR PAAATAAEDG  120
GAAGGGGGAG GGAGGGGARK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV  180
CARCAKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RVRGEVVPVA  240
TTLPVIPPPG VHHGAVGRRV LVQLHDHHDH RLLPRATRQQ AITMNLQLSI GPAAVVAAAS  300
GGGGACAAAA GGEEEQQREE VRRALEEKTA ADAARERARE EAAAAERALE DARRARHRAR  360
GELEKALALR DHAARLIAQV TCHACRQRSL AVMSMAAIDG HGASAVAREH LRGGGVGAGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-17	175	229	3	57	Zinc finger protein JACKDAW
5b3h_F	7e-17	175	229	3	57	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837698	0.0	CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence.
GenBank	JQ681528	0.0	JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629419.1	1e-170	protein indeterminate-domain 16
Swissprot	Q9C9X7	1e-103	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A0E0GJF7	0.0	A0A0E0GJF7_ORYNI; Uncharacterized protein
STRING	ONIVA03G10380.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-87	C2H2-like zinc finger protein

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]