PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G07570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 32547.5 Da PI: 8.1003 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.7 | 1.4e-15 | 168 | 214 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN++f eL +++P + kK++Ka+iL Av+Y+k+Lq ONIVA03G07570.1 168 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 214 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.993 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-20 | 168 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-18 | 168 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-13 | 169 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-15 | 169 | 218 | No hit | No description |
SMART | SM00353 | 4.2E-17 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MDDSSFFMQW AMDTLHQLPS DSTAAAYATD VAGDAFPSLQ ALRNASAAGG GGGGFRDLTV 60 QVDQVHRANS WSSSDSPGGA AATAAAGWSP HVTGGGGGGG RGHRPMSWNF SAASAQPTTE 120 DSGGGGGGGV VPAPPQAMET ETATARAAPV KKGGGGSSSA AAPGYVQDHI IAERRRREKI 180 NQRFIELSTV IPGLKKMDKA TILGDAVKYV KELQEKVKTL EEEDGGRAAA MVVRKSSCSG 240 RQCDGEGRGS RVPEMEVRVW ERSVLVRVQC GNARGLLVRL LSEVEELRLA ITHTSVMPFP 300 ASTVIITITA KAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-15 | 168 | 223 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | ERRRRE |
2 | 173 | 178 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618735.1 | 1e-158 | transcription factor NAI1 isoform X2 | ||||
TrEMBL | A0A0E0GIC5 | 0.0 | A0A0E0GIC5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G07570.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-31 | bHLH family protein |