PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G05710.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 300aa    MW: 33525.4 Da    PI: 6.3506
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G05710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35321242103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll+
  ONIVA03G05710.1  32 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLS 116
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  ONIVA03G05710.1 117 EIHRRKSS 124
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.5E-5828121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.47E-3329121IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3729121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.5E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAFLVERCGG EMVVSMERSH GRSTTTAAPA PFLSKTYQLV DDPSTDDVVS WGEDEATFVV  60
WRPPEFARDL LPNYFKHNNF SSFVRQLNTY GFRKIVADRW EFANEFFRKG AKHLLSEIHR  120
RKSSSCSQPQ PPPPFPMHQH YPLSLFSPPT TTRSPPVGAA AAAAYHFQEE YCSSPADYAG  180
GGGDLLAALS EDNRQLRRRN SLLLSELAHM RKLYNDIIYF LQNHVEPVAP PPLAAATSCR  240
LVELGPSTTE RRRSAASPSG DNDDDAAVRL FGVRLDDDHG KKRRVQLVQE DEGDEQGSEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-21321255109Heat shock factor protein 2
5d8l_B3e-21321255109Heat shock factor protein 2
5d8l_D3e-21321255109Heat shock factor protein 2
5d8l_F3e-21321255109Heat shock factor protein 2
5d8l_H3e-21321255109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257840.0AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.10.0heat stress transcription factor B-4d
RefseqXP_025880033.10.0heat stress transcription factor B-4d
RefseqXP_025880034.10.0heat stress transcription factor B-4d
RefseqXP_025880035.10.0heat stress transcription factor B-4d
RefseqXP_025880036.10.0heat stress transcription factor B-4d
SwissprotQ10KX80.0HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0E0GHN40.0A0A0E0GHN4_ORYNI; Uncharacterized protein
STRINGONIVA03G05710.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-69heat shock transcription factor B4