PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G04550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 22704.7 Da PI: 8.0001 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.2 | 1.9e-10 | 128 | 184 | 36 | 94 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ + + +s++++l+ r k++r +lt+GW++ +a+ +egD+++F++++ ++ lv+ ONIVA03G04550.1 128 MVSMAGTTQSYQMRLK-RSKDSRAMLTTGWNQLIDAKAFDEGDVCLFHFKEVDD-VLVL 184 3334456799999993.4444459************************876433.2444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.12E-7 | 109 | 186 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-9 | 109 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.4E-8 | 113 | 186 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-8 | 133 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.713 | 136 | 190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEGGQAVLGT AGASAARRCG RLHGCRRARG GTASSEQCSV PTRVAEVSCG QYGPRTFSGF 60 DKYCWYGNDV TLTKSMHLQI AHVAAVNFAE DSTLRVHCQE NPYDQCENVQ FSERYINKYI 120 GSPIDDLMVS MAGTTQSYQM RLKRSKDSRA MLTTGWNQLI DAKAFDEGDV CLFHFKEVDD 180 VLVLKITQLR HFFGMHYNYP KY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104428 | 1e-126 | AC104428.2 Oryza sativa Japonica Group chromosome 3 clone OJ1123F12, complete sequence. | |||
GenBank | AK070845 | 1e-126 | AK070845.1 Oryza sativa Japonica Group cDNA clone:J023070F17, full insert sequence. | |||
GenBank | AP014959 | 1e-126 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-126 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0GH75 | 1e-152 | A0A0E0GH75_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G04550.1 | 1e-153 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19020 | 5 | 5 |