PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G04400.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 379aa    MW: 43672.6 Da    PI: 8.902
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G04400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.87.8e-29381482101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEEE CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFkh 83 
                      Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+Y   +++  +k+s +            +++ weF++
  ONIVA03G04400.1  38 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRS-HfyslrfqgfrkiDPDRWEFAN 130
                      9**********************************************************888888777664.358888877765449******* PP

                      SXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  84 ksFkkgkkellekikrkk 101
                      + F +g+++ll+ ikr++
  ONIVA03G04400.1 131 DGFLRGQRHLLKMIKRRR 148
                      ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.11E-3134147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-4734147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-3334147IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-143861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.4E-2738147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-147688IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-1489101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEKMMPGMVK EEWPPSSPEE GEAPRPMEGL HEVGPPPFLT KTFDLVADPA TDGVVSWGRA  60
GSSFVVWDPH VFAAVLLPRF FKHNNFSSFV RQLNTYFLVR TNYLNKRSHF YSLRFQGFRK  120
IDPDRWEFAN DGFLRGQRHL LKMIKRRRPL SYLPGSQQAL GTCLEVGQFG LDEEIDRLKR  180
DKNILLAEVV KLRHKQQSTK ANMRAMEERL QHAEQKQVQM MGFLARAMQN PDFFHQLIHQ  240
QDKMKGLEDT FSKKRTRSID IVPFLNPGEV SQGDQLESTL LFDPRPFAEL NDEPAKSELE  300
NLALNIQGLG KGKQDVNRTR NQPRNQASNE TELTDDFWEE LLNEGARDDA GIPGMERRRP  360
RYVDALAQKL GYLSNSSQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-213614718120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444890.0AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0D3FE470.0A0A0D3FE47_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GH510.0A0A0E0GH51_ORYNI; Uncharacterized protein
STRINGONIVA03G04400.10.0(Oryza nivara)
STRINGOBART03G04630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-98heat shock transcription factor A6B