PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G03810.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 444aa    MW: 48429.9 Da    PI: 10.6409
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G03810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.76.2e-21219279371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k   ++ek+e+ g++t+ne  ++    d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  ONIVA03G03810.1 219 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 279
                      689*******...*****999******9..566...8899********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-9213243IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-25217279IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.1E-19220279IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.21E-16220280IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-22244284IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.50E-37284381IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.38E-35286398No hitNo description
SMARTSM011382.4E-72286442IPR014889Transcription factor DP, C-terminal
PfamPF087818.7E-35287415IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MRPPGTALGF GLISGAGSRR VTEPKPPNFI RKKIKIKRKK QKRKEEKRSS SPRLCPPSRR  60
FLISFSPSNL PPLCRFRVSA LQLLPNSGPR FARSRPPMVS GVAHRPDDDG GRAASTFQRP  120
PQPAGARPSL ATPPPSGGAQ SASTSGGSAG SPSSRSEQHV PAAAGMAAGA AAASTPISEN  180
TFLRLNDLDI HGDDAPSSQA PTSKKKKRGA RAVGPDKGGR GLRQFSMKVC EKVESKGRTT  240
YNEQQYDEKN IRRRVYDALN VLMAMEIISK DKKEIQWKGL PRTSINDIED LQTELVGLKS  300
RIEKKNTYLQ ELQDQLIQRN EQLYGSGNIP SGGVALPFIL VQTRPHATVE VEISEDMQLV  360
HFDFNSTPFE LHDDSFVLKA MSSCGEEQID GIHDLISNGG ESSSMPNIYR QQVQQPARST  420
NGTARLPSSP PIPGILKGRV KHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-25211284193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13043RKKIKIKRKKQKRK
23647KRKKQKRKEEKR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376350.0AC137635.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628001.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-115DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0E0GGX60.0A0A0E0GGX6_ORYNI; Uncharacterized protein
STRINGONIVA03G03810.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-112Transcription factor DP