PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G03740.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 1477aa MW: 161701 Da PI: 5.9333 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 1367 | 1392 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C+++F +k +L+ H+r+ + ONIVA03G03740.2 1367 FQCDieFCDMTFETKAELRAHQRNiC 1392 899999*****************877 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00043 | 1392 | 1414 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+Fs++ +LkrH+ +H ONIVA03G03740.2 1392 CTdeSCGKRFSSHKYLKRHQCVH 1414 77778***************998 PP | |||||||
3 | zf-C2H2 | 13.7 | 0.00019 | 1450 | 1476 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ dCg+sF+ s++ rH ++ H ONIVA03G03740.2 1450 YKCSapDCGQSFRYVSDYSRHRKKfnH 1476 99********************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 9.1E-13 | 29 | 70 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.605 | 30 | 71 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.3E-13 | 31 | 64 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 1.92E-28 | 212 | 394 | No hit | No description |
SMART | SM00558 | 8.5E-49 | 229 | 398 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 34.774 | 232 | 398 | IPR003347 | JmjC domain |
Pfam | PF02373 | 3.1E-37 | 262 | 381 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 1361 | 1389 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.538 | 1367 | 1389 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 12 | 1367 | 1389 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 2.3 | 1390 | 1414 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.006 | 1390 | 1419 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1392 | 1414 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.4E-6 | 1392 | 1426 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-7 | 1396 | 1420 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.01E-10 | 1414 | 1470 | No hit | No description |
SMART | SM00355 | 6.6E-4 | 1420 | 1444 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.967 | 1420 | 1449 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.9E-11 | 1421 | 1444 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1422 | 1444 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-10 | 1445 | 1472 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.365 | 1450 | 1477 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 1450 | 1476 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1452 | 1476 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0032452 | Molecular Function | histone demethylase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1477 aa Download sequence Send to blast |
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC 60 KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PSPAAASDSS IPPSSSSPPP ASAAVFTTRH 120 QELGNPRRGR PTPQVLKQVW QSGERYTLDQ FESKSRAFSK THLAGLHEPT ALAVESLFWK 180 ASADRPIYIE YANDVPGSGF AAPVQLQRKK KQKRETAPMD EWEKSSGWRL SNSPWNLQAI 240 ARAPGSLTRF MPDDVPGVTS PMVYIGMLFS WFAWHVEDHD LHSLNFLHTG APKTWYAVPG 300 DRAVELEEVI RVHGYGGNTD RIASLAVLGE KTTLMSPEVL IDNGVPCCRL VQYPGEFVVT 360 FPRAYHVGFS HGFNCGEAAN FATPQWLKFA KEAAVRRAVM NYLPMLSHQQ LLNPRELLSG 420 IRTSRLRDRK KEDRELLVKQ EFLQDMISEN ELICSFLGKK SVDNVVLWEP DLLPSLTALH 480 PCSSCSKAPE KKGEDGPRIG STQSSSKDDS SSDGTACMTG TQSKGLSMDS KQAPEGEKLD 540 TDDGDDLPFD LSIDSGSLTC VACGILGYPF MAILQPSRKA LEEISLVDKE RYKLSCEKEI 600 CSNVLPCSPN DGSSGCPLIA NRSSSPVENA NLSHQDVKPI RSDISLMGKE FNGTLGKHIG 660 TSCSCSSENT IHPYGDTETP EKKIPSDCPG SELSKQSGRG DVNVPDVEGS EETISWNTGC 720 AFARPRIFCL QHALEIEELL ASKGGVHALI ICHADYVKLK ALAISIAEEI EFQFDYKDVA 780 LANASKSNLH LINISIDDEG YEEEGTDWTS RMGLNLKHSS KIRKETSESQ EQPPLSFWGL 840 FSKPSPISVV SNLKWLCRKA RTPYKVIGYA SSPDVVATPD KVKPAVTKTQ IDTSGNAHEN 900 IGSEQTLQQD CVLQESNDVA DMCKRPKVND QDGHSLINIP IAVAEYPMMH QVCERPVSVS 960 ACDDPICSFD SQDSPTTVAV SAGKPTREQC GAESTELSTV KQFLDNGLIA EGGSMNFISN 1020 HEHLESDNAT SVCKDEQLQV QQDQLAMVLC NNPNTELVAG ELHGGAASST LENEDSCGNT 1080 SYCSDTVLKN SKPDTDDQPE TCDRSVVLVT PKSSCDQMIS SSDRSCSLTL DCPVSTDAAF 1140 SSEKLSMAHD LMGSELQAVH NSKAEVAASL TDVKGAKLNS IHTAQLPHES PSSDFIISEG 1200 AQSASTTAIP RKNGTSMHTE SNSIDILLGV LADESKVSSG KDEVGKASLT LMTLAGNDQS 1260 ADDVTQDEVA EITDPSHGFC ASDIVSRSIG SSNRTNIICY ARRKHKRKSG SEFNINSPQS 1320 LGSFVRSPCE SLRPRTRPAI VEDMTNETKT AEASTANKRK KAKVEAFQCD IEFCDMTFET 1380 KAELRAHQRN ICTDESCGKR FSSHKYLKRH QCVHRDERPF KCPWDGCPMT FKWLWAQTEH 1440 IRVHTGERPY KCSAPDCGQS FRYVSDYSRH RKKFNHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 1e-74 | 23 | 418 | 8 | 352 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 1e-74 | 23 | 418 | 8 | 352 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 213 | QRKKKQKR |
2 | 207 | 214 | RKKKQKRE |
3 | 1301 | 1307 | RRKHKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630480.1 | 0.0 | lysine-specific demethylase SE14-like isoform X1 | ||||
Swissprot | Q10RP4 | 0.0 | SE14_ORYSJ; Lysine-specific demethylase SE14 | ||||
TrEMBL | A0A0E0GGW8 | 0.0 | A0A0E0GGW8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G03740.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 1e-179 | C2H2 family protein |