PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G02430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 43183.6 Da PI: 4.665 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7.1e-12 | 182 | 224 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L ONIVA03G02430.1 182 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 224 79*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.129 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 180 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-13 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.24E-5 | 182 | 229 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.8E-16 | 182 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 182 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGMMMS DLLFYGGDGG SAEARGGMDG 60 SPFQELASMA APPPQHPHEE FNFDCLSEVC NPYRSCGAQL VPSEAASQTQ TQLTPLRDAM 120 VAEEETSGDK ALLHGGGGSS SPTFMFGGGA GESSEMMAGI RGVGGGVHPR SKLHGTPSKN 180 LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELTERIKT LEEEIGATPE 240 ELDLLNTMKD SSSGNNNEML VRNSTKFDVE NRGSGNTRIE ICCPANPGVL LSTVSALEVL 300 GLEIEQCVVS CFSDFGMQAS CLQEDGKRQV VSTDEIKQTL FRSAGYGGSS GSTSFLNTPE 360 SKLKICSSIV SFAFVNRYGN RPCDLSNIGF ELNAKVPIVC TLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 190 | ERRRRKRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060029 | 0.0 | AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629094.1 | 0.0 | transcription factor bHLH93 | ||||
TrEMBL | A0A0E0GGE8 | 0.0 | A0A0E0GGE8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G02430.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 4e-58 | beta HLH protein 93 |