PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G00490.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 697aa MW: 78422.8 Da PI: 5.3719

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G00490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	124.7	1.1e-38	46	128	3	84
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaags 84 ++r + +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+ + + + ++ ONIVA03G00490.1 46 GRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSSSSVsQPPPTQQQ 128 57888899************************************************************877766322333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.2E-35	47	131	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.09E-187	254	693	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.8E-205	257	691	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.5E-114	263	681	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	294	308	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	315	333	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	337	358	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	341	349	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	1.6E-8	420	429	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.3E-76	430	452	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	503	522	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	537	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	554	565	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	572	595	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.6E-8	575	585	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.3E-76	612	634	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.6E-8	663	677	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	1.6E-8	678	692	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016021	Cellular Component	integral component of membrane
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MQQQQQAMEE DGVKEEEEEY YLEEEDEGEE ETRPPLQQQQ QQVGLGRRGR AREEKERTKL 60 RERQRRAITA RILAGLRRHG NYNLRVRADI NEVIAALARE AGWVVLPDGT TFPSSSSSVS 120 QPPPTQQQLQ AAEPELSELE AKYRRVASVP TIERLPSLGL IIIIMISSPA LFFLLQPGRP 180 SIAAPPLPSS PAPPLRGISI SPVAARPISS LRSSSSIRII SPPHALPDPL LSLPSMDPQE 240 VPDLLPPRPP ERDFAGTPYV PVYVMLPLGV VNGNGEVVDA DVLVGQLRVL KAAGVDGVMV 300 DCWWGNVEAH RPQEYNWTGY KRLFHMIREL KLKLQVVMSF HECGGNVGDD VSIPLPHWVT 360 EIGRSNPDIY FTDRAGRRNT ECLSWGIDKE RVLQGRTGVE VYFDYMRSFR VEFDEYFEDG 420 IISEIEIGLG ACGELRYPSY PAKHGWKYPG IGEFQCYDRY LQKSLRRAAE ARGHTIWARA 480 PDSAGHYNSE PNLTGFFSDG GDYDSYYGRF FLNWYSQVLV DHADRVLMLA RLAFEGSDIA 540 VKVSGVHWWY KTASHAAELT AGFYNPCNRD GYASIAAVLK KHGAALNFTC VELRTMDQHE 600 VFPEAFADPE GLVWQVLNAA WDAGIPVASE NALPCYDRDG FNKILENAKP LNDPDGRHLL 660 GFTYLRLTKV LFERANFLEF ERFVKRMHGE AVLDLQV

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MQQQQQAMEE DGVKEEEEEY YLEEEDEGEE ETRPPLQQQQ QQVGLGRRGR AREEKERTKL  60
RERQRRAITA RILAGLRRHG NYNLRVRADI NEVIAALARE AGWVVLPDGT TFPSSSSSVS  120
QPPPTQQQLQ AAEPELSELE AKYRRVASVP TIERLPSLGL IIIIMISSPA LFFLLQPGRP  180
SIAAPPLPSS PAPPLRGISI SPVAARPISS LRSSSSIRII SPPHALPDPL LSLPSMDPQE  240
VPDLLPPRPP ERDFAGTPYV PVYVMLPLGV VNGNGEVVDA DVLVGQLRVL KAAGVDGVMV  300
DCWWGNVEAH RPQEYNWTGY KRLFHMIREL KLKLQVVMSF HECGGNVGDD VSIPLPHWVT  360
EIGRSNPDIY FTDRAGRRNT ECLSWGIDKE RVLQGRTGVE VYFDYMRSFR VEFDEYFEDG  420
IISEIEIGLG ACGELRYPSY PAKHGWKYPG IGEFQCYDRY LQKSLRRAAE ARGHTIWARA  480
PDSAGHYNSE PNLTGFFSDG GDYDSYYGRF FLNWYSQVLV DHADRVLMLA RLAFEGSDIA  540
VKVSGVHWWY KTASHAAELT AGFYNPCNRD GYASIAAVLK KHGAALNFTC VELRTMDQHE  600
VFPEAFADPE GLVWQVLNAA WDAGIPVASE NALPCYDRDG FNKILENAKP LNDPDGRHLL  660
GFTYLRLTKV LFERANFLEF ERFVKRMHGE AVLDLQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bya_A	1e-158	259	690	11	444	BETA-AMYLASE
1byb_A	1e-158	259	690	11	444	BETA-AMYLASE
1byc_A	1e-158	259	690	11	444	BETA-AMYLASE
1byd_A	1e-158	259	690	11	444	BETA-AMYLASE
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070300	0.0	AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459849.2	0.0	beta-amylase 2, chloroplastic
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0E0GFN0	0.0	A0A0E0GFN0_ORYNI; Beta-amylase
STRING	ONIVA03G00490.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]