PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA02G41200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 665aa MW: 73420.2 Da PI: 4.9998 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 113 | 134 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f++ G C GdrC F H ONIVA02G41200.1 113 VPCYYFQK-GMCVKGDRCAFLHL 134 69******.*************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.9E-4 | 16 | 44 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.638 | 16 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.8E-11 | 17 | 71 | No hit | No description |
PROSITE profile | PS50103 | 11.028 | 47 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.554 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-5 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.3E-5 | 112 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.7 | 114 | 133 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 114 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 665 aa Download sequence Send to blast |
MDSAVRPPVD AEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN 60 CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK 120 GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF 180 DKPKDSAHNG KTAQKQNLTN RPGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV 240 EMGEFVREPS AGSDVLTGGA DDNTEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH 300 RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD 360 RHRRRGEEQA SNDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR 420 GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL 480 TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG 540 SQNDFRNIED DIVGMNTEGN GEEAFRSDDI VGMNTEGNGE EAFQPEDDVV YGDSLSPADD 600 IAAEAADDAS RELEEQQDVE TAEEYDYEMD DVNAAEENDY QEYEDEDDDL EDDDDFARKV 660 GVMIT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004082 | 0.0 | AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626088.1 | 0.0 | zinc finger CCCH domain-containing protein 19 isoform X1 | ||||
Swissprot | Q6K977 | 0.0 | C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19 | ||||
TrEMBL | A0A0E0GFC3 | 0.0 | A0A0E0GFC3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G41200.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13097 | 21 | 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|