PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G39820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 660aa    MW: 73136.6 Da    PI: 4.939
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G39820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.64.2e-165305592655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +AtPk++ ++mkv+gLt++hvkSHLQkYR+
  ONIVA02G39820.1 530 EATPKAVQKVMKVDGLTIYHVKSHLQKYRT 559
                      7****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF111077.3E-471211No hitNo description
PfamPF111074.6E-7218289No hitNo description
SuperFamilySSF466891.67E-5529560IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-14529560IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-11530559IPR006447Myb domain, plants
PfamPF143793.2E-18577619IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE  60
SASELDAALV QLASSPNFPK GIEDIRSKTL AMARELVVKH FLKTTNAENL GAVLQAVVEM  120
DMDGISASGE CNVCQEYVQS ILDMNLPSLM RTKNARDVGH STSSDEFCEE SLFTGNSQIL  180
LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IIDKFILWKQ  240
WKAKCLSYLL DERTIRIMSG TNMIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMEMDICE  300
YARQSLESEP YILWLLPPVL TAAAMPPRSS LFKIYLVEID KQLGEAASKD RKCNCGGDGI  360
DQHQNSSNFT SDLYINKSES PNGKLSSESY AIDTSGCDSS LPPTQSLYKG NPSSLRMVYP  420
KVSEQNSWSQ EPLPGPFVCP TSVDFFDQQD MTIFDQQIQD NIAASPSTNL AKQNEWFSSG  480
TSLQYLESSV SAGSVLKAVD ATSTTPSNYL HCHAQRNTSN PPNFNEICSE ATPKAVQKVM  540
KVDGLTIYHV KSHLQKYRTV HHRPQLSDGR GMETTCEGLR VQIGLQKQLH EQLEIQRKLQ  600
LQVEEHSKYL AMIIEKQSES LRQLGALPRS LDAPTQVLDN RETCEGQTGD ADSAEQKPEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663820.0AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627299.10.0uncharacterized protein LOC4331121
RefseqXP_015627301.10.0uncharacterized protein LOC4331121
RefseqXP_015627302.10.0uncharacterized protein LOC4331121
RefseqXP_025878774.10.0uncharacterized protein LOC4331121
RefseqXP_025878775.10.0uncharacterized protein LOC4331121
TrEMBLA0A0E0GES00.0A0A0E0GES0_ORYNI; Uncharacterized protein
STRINGONIVA02G39820.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.17e-28phosphate starvation response 1