PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G39820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 660aa MW: 73136.6 Da PI: 4.939 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 50.6 | 4.2e-16 | 530 | 559 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++ ++mkv+gLt++hvkSHLQkYR+ ONIVA02G39820.1 530 EATPKAVQKVMKVDGLTIYHVKSHLQKYRT 559 7****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF11107 | 7.3E-47 | 1 | 211 | No hit | No description |
Pfam | PF11107 | 4.6E-7 | 218 | 289 | No hit | No description |
SuperFamily | SSF46689 | 1.67E-5 | 529 | 560 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-14 | 529 | 560 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-11 | 530 | 559 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 3.2E-18 | 577 | 619 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE 60 SASELDAALV QLASSPNFPK GIEDIRSKTL AMARELVVKH FLKTTNAENL GAVLQAVVEM 120 DMDGISASGE CNVCQEYVQS ILDMNLPSLM RTKNARDVGH STSSDEFCEE SLFTGNSQIL 180 LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IIDKFILWKQ 240 WKAKCLSYLL DERTIRIMSG TNMIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMEMDICE 300 YARQSLESEP YILWLLPPVL TAAAMPPRSS LFKIYLVEID KQLGEAASKD RKCNCGGDGI 360 DQHQNSSNFT SDLYINKSES PNGKLSSESY AIDTSGCDSS LPPTQSLYKG NPSSLRMVYP 420 KVSEQNSWSQ EPLPGPFVCP TSVDFFDQQD MTIFDQQIQD NIAASPSTNL AKQNEWFSSG 480 TSLQYLESSV SAGSVLKAVD ATSTTPSNYL HCHAQRNTSN PPNFNEICSE ATPKAVQKVM 540 KVDGLTIYHV KSHLQKYRTV HHRPQLSDGR GMETTCEGLR VQIGLQKQLH EQLEIQRKLQ 600 LQVEEHSKYL AMIIEKQSES LRQLGALPRS LDAPTQVLDN RETCEGQTGD ADSAEQKPEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066382 | 0.0 | AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627299.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_015627301.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_015627302.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_025878774.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
Refseq | XP_025878775.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
TrEMBL | A0A0E0GES0 | 0.0 | A0A0E0GES0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G39820.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5494 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 7e-28 | phosphate starvation response 1 |