PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G39640.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 334aa    MW: 36545.9 Da    PI: 7.4375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G39640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.7e-49101571128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                      lppGfrF P+deelv++yL++kv +++                    ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratk
  ONIVA02G39640.1  10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagvgggA---AaaaagggTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATK 100
                      79********************99999665555551...055566667***************87788999*********************** PP

              NAM  80 sgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      sgyWkatgkd+ +++         + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  ONIVA02G39640.1 101 SGYWKATGKDRVIHNPklhaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 157
                      **************98777776655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-587176IPR003441NAC domain
PROSITE profilePS5100555.0310176IPR003441NAC domain
PfamPF023651.5E-2711157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGGGAAAAAA GGGTMVEVDL  60
HTHEPWELPD VAKLSTNEWY FFSFRDRKYA TGLRTNRATK SGYWKATGKD RVIHNPKLHA  120
AAHRRASIVG MRKTLVFYRG RAPNGVKTNW VMHEFRMENP HTPPKEDWVL CRVFYKKKAE  180
TETESSYSME NEQEAVIAMA RSAAVIKAGG CYSNSSSSHD PAAAGHHSPP PFPASLAACS  240
SSHHYSSHPP PPPDHHHHHH MPVTGGGGGS LNEFIPTTSM ALYSSIFDFS QHLDGGAVAA  300
SASAAGSRVD GGEQCGLMEL GLEEHYNYNG LMPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4611824170NO APICAL MERISTEM PROTEIN
1ut4_B1e-4611824170NO APICAL MERISTEM PROTEIN
1ut7_A1e-4611824170NO APICAL MERISTEM PROTEIN
1ut7_B1e-4611824170NO APICAL MERISTEM PROTEIN
3swm_A1e-4611827173NAC domain-containing protein 19
3swm_B1e-4611827173NAC domain-containing protein 19
3swm_C1e-4611827173NAC domain-containing protein 19
3swm_D1e-4611827173NAC domain-containing protein 19
3swp_A1e-4611827173NAC domain-containing protein 19
3swp_B1e-4611827173NAC domain-containing protein 19
3swp_C1e-4611827173NAC domain-containing protein 19
3swp_D1e-4611827173NAC domain-containing protein 19
4dul_A1e-4611824170NAC domain-containing protein 19
4dul_B1e-4611824170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8302500.0CT830250.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE62e-59NAC22_ARATH; NAC domain-containing protein 21/22
SwissprotQ9FLJ23e-59NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0E0GEN90.0A0A0E0GEN9_ORYNI; Uncharacterized protein
STRINGONIVA02G39640.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]