PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G39270.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 292aa    MW: 31696.6 Da    PI: 6.7829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G39270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11127174355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  ONIVA02G39270.1 127 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 174
                      5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.456124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-9127174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-14128189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15128187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-10129178No hitNo description
SMARTSM003533.2E-11130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MYHQEEHARM QEQFAGTPLV EQPVRFDQFY PASMAPNQFH PSHCSSFPAF GGSSALPSLA  60
FGAVATTKKE QVQQPSPSSS NVLSFAGQVQ GSTTTLDFSG RGWQQDDGVG VFQQPPERRS  120
RPPANAQEHV IAERKRREKL QQQFVALATI VPGLKKTDKI SLLGSTIDYV KQLEEKVKAL  180
EEGSRRTAEP TTAFESKCRI TVDDDDGGSA SSGTDDGSSS SSSPTVEASI HGSTVLLKIC  240
CKERRGLLVM ILSELEKQGL SIINTSVVPF TDSCLNITIT AKARLALPVY YS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137ERKRRE
2133138RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997320.0AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence.
GenBankAK2881570.0AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880159.10.0transcription factor bHLH18
TrEMBLA0A0E0GEJ40.0A0A0E0GEJ4_ORYNI; Uncharacterized protein
STRINGONIVA02G39270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-30bHLH family protein