PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G39130.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 763aa MW: 82693.8 Da PI: 5.2328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.3e-11 | 590 | 638 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq ONIVA02G39130.3 590 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 638 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50053 | 8.96 | 1 | 88 | IPR000626 | Ubiquitin domain |
Gene3D | G3DSA:3.10.20.90 | 8.7E-7 | 20 | 99 | No hit | No description |
PROSITE profile | PS50181 | 11.405 | 334 | 380 | IPR001810 | F-box domain |
SuperFamily | SSF81383 | 1.83E-13 | 334 | 389 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 2.4E-10 | 337 | 389 | No hit | No description |
Pfam | PF12937 | 4.3E-6 | 339 | 381 | IPR001810 | F-box domain |
SMART | SM00256 | 1.5E-5 | 340 | 380 | IPR001810 | F-box domain |
CDD | cd00083 | 2.72E-11 | 585 | 642 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-17 | 585 | 653 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-17 | 587 | 654 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.796 | 587 | 637 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-9 | 590 | 638 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 593 | 643 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK 180 REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL 240 VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST 300 AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV 360 QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ 420 KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQM YSPPCSAAAS SQGHCFAVGA 480 NQLASLDLAM DFDEPILFPV HNASLQEGIQ FYNPTGDTQL SRNMSIDKCL KGSKRKGSGE 540 GSSSLHSQEE TGEMPQRELS MEHAGEKAGD ADASREEYVH VRAKRGQATN SHSLAERFRR 600 EKINERMKLL QDLVPGCNKI TGKAMMLDEI INYVQSLQRQ VEFLSMKLST ISPELNSDLD 660 LQDILCSQDA RSAFLGCSPQ LSNAHPNLYR AAQQCLSPPG LYGSVCVPNP ADVHLARAGH 720 LASFPQQRGL IWNEELRNIA PAGFASDAAG TSSLENSDSM KVE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631331.1 | 0.0 | F-box protein SKIP22 | ||||
TrEMBL | A0A0E0GEH9 | 0.0 | A0A0E0GEH9_ORYNI; Uncharacterized protein | ||||
STRING | ORGLA03G0090200.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-45 | bHLH family protein |