PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G39130.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 807aa    MW: 87017.6 Da    PI: 5.1651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G39130.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11634682355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  ONIVA02G39130.2 634 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 682
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500538.96188IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.909.4E-72099No hitNo description
PROSITE profilePS5018111.405334380IPR001810F-box domain
SuperFamilySSF813831.83E-13334389IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.2E-10337389No hitNo description
PfamPF129374.6E-6339381IPR001810F-box domain
SMARTSM002561.5E-5340380IPR001810F-box domain
CDDcd000832.95E-11629686No hitNo description
SuperFamilySSF474594.45E-17629697IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17631698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796631681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-9634682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10637687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL  240
VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST  300
AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV  360
QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ  420
KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQD APAAGIHFDC IIPLPINPYQ  480
LPPSAGACCS TTQASASAKD GGNMYSPPCS AAASSQGHCF AVGANQLASL DLAMDFDEPI  540
LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ  600
RELSMEHAGE KAGDADASRE EYVHVRAKRG QATNSHSLAE RFRREKINER MKLLQDLVPG  660
CNKITGKAMM LDEIINYVQS LQRQVEFLSM KLSTISPELN SDLDLQDILC SQDARSAFLG  720
CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC VPNPADVHLA RAGHLASFPQ QRGLIWNEEL  780
RNIAPAGFAS DAAGTSSLEN SDSMKVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GEH80.0A0A0E0GEH8_ORYNI; Uncharacterized protein
STRINGORGLA03G0090200.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-45bHLH family protein