PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G39130.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 807aa MW: 87017.6 Da PI: 5.1651 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 634 | 682 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq ONIVA02G39130.2 634 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 682 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50053 | 8.96 | 1 | 88 | IPR000626 | Ubiquitin domain |
Gene3D | G3DSA:3.10.20.90 | 9.4E-7 | 20 | 99 | No hit | No description |
PROSITE profile | PS50181 | 11.405 | 334 | 380 | IPR001810 | F-box domain |
SuperFamily | SSF81383 | 1.83E-13 | 334 | 389 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 2.2E-10 | 337 | 389 | No hit | No description |
Pfam | PF12937 | 4.6E-6 | 339 | 381 | IPR001810 | F-box domain |
SMART | SM00256 | 1.5E-5 | 340 | 380 | IPR001810 | F-box domain |
CDD | cd00083 | 2.95E-11 | 629 | 686 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-17 | 629 | 697 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 631 | 698 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.796 | 631 | 681 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-9 | 634 | 682 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 637 | 687 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence Send to blast |
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK 180 REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL 240 VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST 300 AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV 360 QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ 420 KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQD APAAGIHFDC IIPLPINPYQ 480 LPPSAGACCS TTQASASAKD GGNMYSPPCS AAASSQGHCF AVGANQLASL DLAMDFDEPI 540 LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ 600 RELSMEHAGE KAGDADASRE EYVHVRAKRG QATNSHSLAE RFRREKINER MKLLQDLVPG 660 CNKITGKAMM LDEIINYVQS LQRQVEFLSM KLSTISPELN SDLDLQDILC SQDARSAFLG 720 CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC VPNPADVHLA RAGHLASFPQ QRGLIWNEEL 780 RNIAPAGFAS DAAGTSSLEN SDSMKVE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0GEH8 | 0.0 | A0A0E0GEH8_ORYNI; Uncharacterized protein | ||||
STRING | ORGLA03G0090200.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-45 | bHLH family protein |