PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G39130.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 837aa MW: 90605.8 Da PI: 5.7169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G39130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.5e-11	664	712	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq ONIVA02G39130.1 664 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 712 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	8.96	1	88	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	9.9E-7	20	99	No hit	No description
PROSITE profile	PS50181	11.405	334	380	IPR001810	F-box domain
SuperFamily	SSF81383	1.83E-13	334	389	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	2.1E-10	337	389	No hit	No description
Pfam	PF12937	4.8E-6	339	381	IPR001810	F-box domain
SMART	SM00256	1.5E-5	340	380	IPR001810	F-box domain
SuperFamily	SSF47459	4.58E-17	659	727	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.11E-11	659	716	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-17	661	728	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	661	711	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-9	664	712	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	667	717	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK 180 REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL 240 VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST 300 AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV 360 QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ 420 KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQP QRSKYKNPIR CQHTSACRWQ 480 DAPAAGIHFD CIIPLPINPY QLPPSAGACC STTQASASAK DGGNVLQIPK PLEMYSPPCS 540 AAASSQGHCF AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI 600 DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG 660 QATNSHSLAE RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM 720 KLSTISPELN SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC 780 VPNPADVHLA RAGHLASFPQ QRGLIWNEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL  240
VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST  300
AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV  360
QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ  420
KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQP QRSKYKNPIR CQHTSACRWQ  480
DAPAAGIHFD CIIPLPINPY QLPPSAGACC STTQASASAK DGGNVLQIPK PLEMYSPPCS  540
AAASSQGHCF AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI  600
DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG  660
QATNSHSLAE RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM  720
KLSTISPELN SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC  780
VPNPADVHLA RAGHLASFPQ QRGLIWNEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0GEH7	0.0	A0A0E0GEH7_ORYNI; Uncharacterized protein
STRING	ONIVA02G39130.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-45	bHLH family protein