PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G37950.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 668aa    MW: 71976 Da    PI: 6.597
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G37950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.33.9e-09214239127
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekA 27 
                      kpr++W+ eLH++Fv av+qL G++  
  ONIVA02G37950.1 214 KPRVVWSVELHRKFVAAVNQL-GIDTC 239
                      79*******************.77665 PP
2Response_reg76.69.3e-26261341109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l + +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ +  
  ONIVA02G37950.1  26 VLAVDDDPVCLKVLETLLLRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGITH 117
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  ONIVA02G37950.1 118 GACDYLLKPVRIEELRN 134
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-3423150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4023151No hitNo description
SMARTSM004483.6E-3024136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.41625140IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-2326135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.50E-2627140No hitNo description
Gene3DG3DSA:1.10.10.605.5E-9212240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MRAAEERKGV VPAARRRDQF PVGMRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL  60
KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC  120
DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NLDFYEECNK PPNADSDHVH GHVTCGSPDQ  180
SGRPSKKRKE YCSEEEDEGE VNTQDIDDPS APKKPRVVWS VELHRKFVAA VNQLGIDTCT  240
GNDKYRLYLK RLSAVASQQV SIVAALGGRD PFLHMGGFEG LQGYQAFTSS SALSSFTPHG  300
LLNSPRNNPA ALGTQGVPAS KSIQTMSGSH TLSHSINDAN KYHLSLPGNQ KGNLGQGLAT  360
SLGQTQMQQK WIHEETDDLS TILSGNGLSN GMSGTLQSVT SSPLLPQELA ECTQAKIVSQ  420
PSIRTSSVSS EHIEGAVGVS SGLLESRVSQ QSTIPLSGFS ANGLLIHGSF NNTCANKLGG  480
TSSSCAPARS SNDLMVARDT KGGASSFGGA MLLPPDTEQK YLNFGGGNGL KQKFDDRTAD  540
SLFDPKFVWS SVPSSQLASN IGAHHAMSQR WNNSSSNSSN IGARMIGQAT SSGSTVIPQM  600
KTDFLVSGDM AMPKNASDLS IPKLQSELSS SSCSFDGLLN SIVKVEKDDV TFSDDLGCGD  660
FYSLGACI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0995810.0AK099581.1 Oryza sativa Japonica Group cDNA clone:J013040N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625496.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A0E0GE230.0A0A0E0GE23_ORYNI; Two-component response regulator
STRINGONIVA02G37950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-82response regulator 12