PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G37880.3

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 262aa MW: 26226.9 Da PI: 7.0418

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G37880.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.7	3.6e-07	222	248	5	31
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 h+++Er RR+ri +++ L+el+P+a ONIVA02G37880.3 222 HSIAERLRRERIAERMKALQELVPNAN 248 99***********************74 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.07E-7	215	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.052	217	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-6	219	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.64E-5	221	249	No hit	No description
Pfam	PF00010	1.3E-4	222	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MQPNARQMHD GGGGGGGGQD DFFDQMLSTL PAVWSELGSG KPAWDLTAGA VGGGGGASDD 60 HSAAAFDDSA LLASRLRQHQ IDGGGDKPIM LQLSDLHRHH GLAAGDDSGG AAGFLPLSLF 120 ADRSQDDIDA AFKSPNGARG DHALYNGFGA AGMHGAAAMQ PPPFGQGGSM PAQSFGGGAA 180 ASGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL 240 QELVPNANKA VVGKGRSDMM PK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	231	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003975	0.0	AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBank	AP004094	0.0	AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627343.1	1e-110	transcription factor bHLH66
TrEMBL	A0A0E0GE15	1e-180	A0A0E0GE15_ORYNI; Uncharacterized protein
STRING	ONIVA02G37880.1	1e-172	(Oryza nivara)