PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G36590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 315aa    MW: 34882.9 Da    PI: 7.7451
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G36590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.9e-2590133144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  ONIVA02G36590.1  90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133
                      79***************************************998 PP
2QLQ606.6e-211853237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FTa+Q+q+L++Q+l+yKy+a++ P+P++L++++++
  ONIVA02G36590.1 18 PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR 53
                     9********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-111753IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8011853IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-151851IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.57390134IPR014977WRC domain
PfamPF088791.5E-2091133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA  60
LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH  120
MHRGKNRSRK PVEMSLATPP PPSSSATSAA SNTSGHATKE VHGEHAFFSD GTEREHHHAA  180
AGHGQWQFKQ LGMEPKQSTT PLFPGAGYGH TAASPYAIDL SKEDDDEKER RQQQQQQQQH  240
CFLLGADLRL EKPAGHDHAA AAQKPLRHFF DEWPHEKNSK GSWMGLEGET QLSMSIPMAA  300
NDLPITTTSR YHNDE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000269|PubMed:15295073}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3) and submergence. {ECO:0000269|PubMed:10712532, ECO:0000269|PubMed:15295073}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2018950.0AF201895.1 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786731.21e-108growth-regulating factor 1-like
SwissprotA2XA731e-108GRF1_ORYSI; Growth-regulating factor 1
TrEMBLA0A0E0GDJ50.0A0A0E0GDJ5_ORYNI; Uncharacterized protein
STRINGONIVA02G36590.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57413652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-52growth-regulating factor 5