PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G36570.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 658aa    MW: 73094 Da    PI: 5.5065
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G36570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07541588347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+++G g W+ I r        Rt  ++k++w+++
  ONIVA02G36570.1 541 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 588
                      7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-12532592IPR009057Homeodomain-like
PROSITE profilePS5129413.899534593IPR017930Myb domain
SMARTSM007179.5E-7538591IPR001005SANT/Myb domain
SuperFamilySSF466894.91E-14540593IPR009057Homeodomain-like
CDDcd116602.84E-17540590No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MEQKKIPRLV SSAPCAISRL NRGGAPISVW RAEQGEGILV GGPQDALDNR SDDNDFDKND  60
NSDPVVYQLV RVEGDGTLIP ATEDEVLQFE TFLHDEKVDD DLPSIDDVTH VEEYFTNDCI  120
VKKPEFEEGP SKLDTADVQT QKLDAGLEED RLCTLNDSIV LPSNCSAVHD QQLDKLNTEQ  180
GANIIAQQDN ASTETTKSTV LNDLSSDKEK ADACSKPVNE ASAGQSVSGV TSSVPDFSIL  240
KGEVCLDDLT MRELQEAFRA TFGRQTTVKD KLWLKRRIAM GLINSCDVPS SGCVVRDYKV  300
IAMGAKQEIP VVEAIPKMEL EANLVRDQVM NPGHERDLPS SLSYHSEEQQ RSSKRLKRVP  360
TDNDEPQVTI FAEQGTTKRI RKPTKRYIEE LSDIDTHEST GRLSSPGKRH VYDEVLLRPR  420
IAPLHEVDSL STAYPTREDT LGGCSVHVPY VSRMRRGRPR SNFIPFLDPE PSVECTEAPA  480
ADVVNLEKEG ERKNHKNTGK KGVHVETSGE KDVQGLQDKD FCNSDDNPKT KRDGKRKHHR  540
AWTLCEVVKL VDGVARYGAG KWSEIRRLAF SSYSYRTSVD LKDKWRNLIR ASQTQLSTEN  600
DGVCPRKSNP SAIPIPVSIL LRVKKLAEMQ SQAGDVRVPI KFSGQSTTVV QGKVSGFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703940.0AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence.
GenBankFJ9402130.0FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625825.10.0uncharacterized protein LOC4330901 isoform X2
TrEMBLA0A0E0GDJ30.0A0A0E0GDJ3_ORYNI; Uncharacterized protein
STRINGONIVA02G36570.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-85TRF-like 6