PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA02G36110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 1062aa MW: 114332 Da PI: 6.4822 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95 | 5.1e-30 | 402 | 461 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ ONIVA02G36110.1 402 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 461 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-31 | 387 | 463 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-27 | 395 | 463 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.529 | 397 | 463 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 402 | 462 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 403 | 461 | IPR003657 | WRKY domain |
Gene3D | G3DSA:3.30.40.10 | 2.5E-5 | 752 | 814 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF07800 | 1.1E-69 | 765 | 928 | IPR012866 | Protein of unknown function DUF1644 |
Gene3D | G3DSA:3.30.40.10 | 2.5E-5 | 847 | 859 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1062 aa Download sequence Send to blast |
MTWDNRIKEE SSLLIALLIR LKHPDIDLDA SGEVALGFKT VPHFSCTKRD KGTQDNQKEA 60 RSMSSKKKRA AIDLSLEAER RRPEEGGGGS DREASDGAAA AAEEDGDVKQ REGPKEETGG 120 EEEKVVEVVV DQGEDGSNEE IKYRTQQAEM IEEDKQPAAA ANVDDDGGDS DGVGASTEEK 180 HMVTEATGGE GDDGGDSRTP MAQDELSEMQ EEMERMKEEN RMLRRVVDKT VRDYYELQMK 240 LAAYQQQPAA ADEPKETEVF LSLGATAAAS AGCGGGFPEA KSKEQAAWRR RSVGSDDSDG 300 GKEDLGLSLS LGASSSYDDD QKAVEARPHD VDGAAAAAMI GGDGSRPAPR GYALLESSKV 360 QGGAAPAAGE LAAGGGITSQ SVNPANRKTR VSVRVRCQGP TMNDGCQWRK YGQKVAKGNP 420 CPRAYYRCTV APGCPVRKQV QRCLEDMSIL VTTYEGTHNH PLPVGATAMA STTSAAATFM 480 LLSSTTSSSS VSDASAAPSS SYLSPYLLNS ASPLLMPGAT GGGGGMQHLN LFGNSPSSSS 540 LLAPQAPGSS KYPWSPNHPP LAGAGGNKRP FWSAGGDGDK PAPAALAENV GAVMSDPNKF 600 SAAIAAAINN FMGKDGESSS GKSSTFAWTR SMDCTATPAS VPAPARPRRE PGCPCLSPFS 660 LSLGLLLSSS SSSSPTPSRP RAHRRRNPAD LLRSRIGRSP PGSRSGRGPD MLHVSEEMAR 720 SARARRHVAR QLRSAPYPIP SYRWKAMKES NRKKTLPAAQ KMDWEDANCS VCMEYPHNAV 780 LLLCSSHDKG CRPYMCGTSH RHSNCLDQFK KAYTKGALLE ELPANTVGTN LDSTPLIAGE 840 KNESVDLACP LCRGKVKGWT IVEPARSYLN GKRRTCMQDG CSFVGTYKEL RKHVKSEHPL 900 AKPREVDPIL EQKWRLLEIE RERQDALSTI TATMGRAIVF GDYVLDLEDE DDLDDVESDE 960 DDNANGHGTD NTRRMLMFLM RQVARHHQNQ RLQNAIGTTG GAEDNYAVSS GANATTPYHY 1020 PLEGDDEDDL VMAGGGSTGM VRPERRRRRR RRNRERLFLG AN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 389 | 465 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 1041 | 1050 | RPERRRRRRR |
2 | 1044 | 1051 | RRRRRRRR |
3 | 1045 | 1051 | RRRRRRR |
4 | 1045 | 1055 | RRRRRRRNRER |
5 | 1046 | 1053 | RRRRRRNR |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004058 | 0.0 | AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08. | |||
GenBank | AP004080 | 0.0 | AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623937.2 | 0.0 | probable WRKY transcription factor 47 | ||||
TrEMBL | A0A0E0GDD0 | 0.0 | A0A0E0GDD0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G36110.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8022 | 34 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68150.1 | 1e-48 | WRKY DNA-binding protein 9 |