PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G36080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 1560aa MW: 174038 Da PI: 8.8924 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.3 | 3.3e-19 | 1423 | 1475 | 33 | 85 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ++ l +ed +g++W+++++ +++s++yvltkGW++Fv+++gL++gD++vF+ + ONIVA02G36080.2 1423 GVLLNFEDGEGKVWRFRYSCWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSGS 1475 56799*********************************************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03254 | 3.2E-180 | 265 | 728 | IPR004938 | Xyloglucan fucosyltransferase |
Pfam | PF03254 | 2.3E-192 | 838 | 1290 | IPR004938 | Xyloglucan fucosyltransferase |
SMART | SM01019 | 0.0056 | 1347 | 1490 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.57E-16 | 1420 | 1477 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-20 | 1421 | 1491 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-16 | 1422 | 1475 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.519 | 1426 | 1490 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.80E-14 | 1428 | 1472 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0036065 | Biological Process | fucosylation | ||||
GO:0042546 | Biological Process | cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008107 | Molecular Function | galactoside 2-alpha-L-fucosyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1560 aa Download sequence Send to blast |
MYYVRGAGGS WEKAESEACV HESARRRGVP MDEKRAARTP RAGARNAVNG GESGCCSEKA 60 ARWGWRAPVE VAVVGFVATL TLLVLLYGGT GSLLSFTSPR TEFVRKLAAD KRGRRGWAAA 120 GGGVARGGGG AGDGRDGEDK CRPAMEAAEA GSMAWRTAVR GRQRSARTTV RPTVAGAIGA 180 ERRGQAGGGG EAGTMGMGGG LVSTFSRMLR SNRMLAGLRL RCTSDSGLVW WRNSSAVVIS 240 AEILNRWLHG IDGRRLQLHR AAAAASPSHG APEDTPESST RHDDDRLLGG LLSQAFDEHS 300 CRSRYTSSLY RRRSPFRPST YLVERLRRYE ARHKRCGPGS ALFQEAVEHL RSGRNAARSE 360 CQYVVWTPFN GLGNRMLALA STFLYALLTD RVLLVHAPPE FDGLFCEPFP GSSWTLPADF 420 LITDFDGVFT MWSPTSYKNM RQAGTISNAT AEQSLPAYVF LDLIQSFTDA AFCDDDQQVL 480 AKFNWMVIKS DVYFAAMLFL MPAYERELTQ LFPEKEAVFH HLARYLFHPS NDVWGIVHRF 540 YEAYLARADE LVGLQVRVFP EMPIPFDNMY EQIIRCSEQE GLLPKLGQTV VVTAANGSSV 600 VAPSTKLTSI LVTSLFPDYY DRIRGVYHAR PTETGEYVAV HQPSHEREQR TEARGHNQRA 660 LAEIYLLSFC DRVVTSAVST FGYIAHGLAG VRPWVLLRPP SPVARAEPAC VRSETVEPCL 720 QALPRRMCGA AEGSDIGALV PHIRHCEDVQ KGVKLGWPPA GRAAENEARR WGRLRRASAR 780 AALVLCSLTM IPVVVVLHRC AVSSSWPDRV FEAKHIAGAG EQDMQDDLPD DLTASQYIGY 840 DKFLGGLLQE GFDEVSCRSR YQFARYHKNF TRIPSSYLLE RLRRQEALQK KCGPGTKSYK 900 QAVKLLRSSQ GVNMTTDCNY LFLTVHAGLG NRMLEIASAF LYALLTNRIL LLDRYQEIGD 960 LFCEPFPGTS WLMPSDFPLN YGEFTQSSPE SYGNMQQNKV VGDNTDRSLA GFRPPYVFLY 1020 LDGNYEFHDK LFFCEDDQQF LQDVPWLIMR TDMYFIPSLF LIPSYQDELS RLFPEKDAVF 1080 HHLARYLFHP TNSIWYSVKG YYRSYLAKAN KTVGIQIRIF EKEGILQKNG RFPYVLEQIL 1140 SCAQNEKLLP EISMKDEAEA PTATKNNQTI AVLTTSLSSW YSDQIQKKYS EHPTVDGTRV 1200 EVYQPSHEEY QRSKNKKHNM KALAEIYLLS MTDVLITSGF STFGYAAQGL SGLTPWIMFR 1260 SENHAMPDPP CRRAMSIEPC FHQAPFYDCK AKRNADLGKM VPFVRHCEDV SWGLKVVLAA 1320 KSQMGVWEAE LVGKGSEIGL AITLLPLLAV FLLGENVRLA VNDFAKAHQP AGTSDTNTSA 1380 FRRRQAQPPA GAQAARGEAL PAAADELRRL RHRRRGHLQL CKGVLLNFED GEGKVWRFRY 1440 SCWNSSQSYV LTKGWSRFVR EKGLRAGDTI VFSGSAYGPD KLLFIDCKKN NTAAATGDEK 1500 PITSGEATRV VRLFGMDITG GGGDCRKRER AVEMGQEAFL MKRQCVHSTP HYTVRSAKAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5koe_A | 1e-168 | 280 | 1317 | 8 | 476 | Galactoside 2-alpha-L-fucosyltransferase |
5koe_B | 1e-168 | 280 | 1317 | 8 | 476 | Galactoside 2-alpha-L-fucosyltransferase |
5koe_C | 1e-168 | 280 | 1317 | 8 | 476 | Galactoside 2-alpha-L-fucosyltransferase |
5koe_D | 1e-168 | 280 | 1317 | 8 | 476 | Galactoside 2-alpha-L-fucosyltransferase |
5kop_A | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kop_B | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kop_C | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kop_D | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kor_A | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kor_B | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kor_C | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kor_D | 1e-168 | 280 | 1317 | 53 | 521 | Galactoside 2-alpha-L-fucosyltransferase |
5kwk_A | 1e-168 | 280 | 1317 | 8 | 476 | Galactoside 2-alpha-L-fucosyltransferase |
5kwk_B | 1e-168 | 280 | 1317 | 8 | 476 | Galactoside 2-alpha-L-fucosyltransferase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100977 | 0.0 | AK100977.1 Oryza sativa Japonica Group cDNA clone:J023143L21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878703.1 | 0.0 | uncharacterized protein LOC4330824 isoform X2 | ||||
TrEMBL | A0A0E0GDC4 | 0.0 | A0A0E0GDC4_ORYNI; Uncharacterized protein | ||||
STRING | OBART02G33670.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 5e-27 | related to ABI3/VP1 1 |