PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G35790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 35306.9 Da PI: 6.5107 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.4e-14 | 136 | 187 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ ONIVA02G35790.1 136 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVAGAINFVKELE 187 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.76E-14 | 134 | 191 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-17 | 134 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.885 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 136 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-10 | 141 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MALEAVVFPQ EHLSCAAAMY EAPPSSLGCG VDMDEFEENG GVVLQEEAGV AVHGGGGGGA 60 GGMMSVWVNA ATCARSIAAS GAVEEFWDER QYPVSSPPAA PTPAASGGGG GHAKAAARRR 120 RRRPKVVKNK EEAESQRRNH IAVERNRRRQ MNEYLAVLRS LMPPSYAQRG DQASIVAGAI 180 NFVKELEQLL QSLEAQKRRA EHAPPAPPFA GFFTFPQYST TVGDNNAAGS GAGDGEGGCG 240 ARPGAADIEV AMAESHANVR VLAPRRPRQL LRMVVALQCL GLTVLHLNVT TTADHLALYS 300 FSLKMEDECR LSSVDEIAGA VNQMVTKIAG ECIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 122 | RRRRRR |
2 | 137 | 147 | RNHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623907.1 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | A0A0E0GD84 | 0.0 | A0A0E0GD84_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2X9U0 | 0.0 | A2X9U0_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G35790.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10462 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-52 | bHLH family protein |