PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G34070.4
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 503aa    MW: 55803.7 Da    PI: 8.8744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G34070.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.00035190207219
                      HHHHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsa 19 
                      r +h++ E+rRR +iN++
  ONIVA02G34070.4 190 RSKHSATEQRRRTKINDR 207
                      889*************96 PP
2HLH247.1e-082512831955
                      HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  ONIVA02G34070.4 251 RLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 283
                      5899*******8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-15187206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-7190287No hitNo description
PROSITE profilePS508889.502232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-9249292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15251295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5251283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRQAS RGTNQAQQDI ILAAFNSKTI SYKYMVQEMC  240
SKMQFFMLSF RLEILRELLP HTDQKRDKAS FLSEVIEYIR FLQEKVQKYE EADPERNHED  300
SKSMPWAKVY YRSCWRNTKN TSQVQGEDLS PSTQDMNNEQ YGPKHISAAQ PALFNTQSVT  360
STTTSSSHMA TGTPQNLEKN STPSNQPPWL SMSTMRQESE PGNKMPNKHE KQTLHDENHS  420
ISSAYSQGLF NRLTEALKKS GLDPSQANIA VEINLAKRAR DNTSDNSKIV CLIIILYLCP  480
DFTSQINEDE EPIQITKRRC NKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.10.0transcription factor BIM2
RefseqXP_015627559.10.0transcription factor BIM2
RefseqXP_015627560.10.0transcription factor BIM2
TrEMBLA0A0E0GCK80.0A0A0E0GCK8_ORYNI; Uncharacterized protein
STRINGONIVA02G34070.40.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.31e-28bHLH family protein