PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G34070.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 48553.4 Da PI: 10.493 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.0003 | 190 | 207 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR +iN++ ONIVA02G34070.3 190 RSKHSATEQRRRTKINDR 207 889*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-4 | 187 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG 60 RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF 120 AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS 180 SADQGPSTPR SKHSATEQRR RTKINDRQAS RGLKYFVNSC HTLIRRETKL LSFRRKSKSM 240 RKPIQKGITR IPNPCHGYYH SHAKVYYRSC WRNTKNTSQV QGEDLSPSTQ DMNNEQYGPK 300 HISAAQPALF NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESEPGNK 360 MPNKHEKQTL HDENHSISSA YSQGLFNRLT EALKKSGLDP SQANIAVEIN LAKRARDNTS 420 DNSKINEDEE PIQITKRRCN KS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068228 | 0.0 | AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627558.1 | 0.0 | transcription factor BIM2 | ||||
Refseq | XP_015627559.1 | 0.0 | transcription factor BIM2 | ||||
Refseq | XP_015627560.1 | 0.0 | transcription factor BIM2 | ||||
TrEMBL | A0A0E0GCK7 | 0.0 | A0A0E0GCK7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G34070.4 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.1 | 3e-15 | bHLH family protein |