PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G33840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 474aa    MW: 51628.5 Da    PI: 5.6335
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G33840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.7e-0771112540
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       C+ ++e++   +C+++   lC +C  + H+       Ht++
  ONIVA02G33840.1  71 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 112
                      7*****************************657888888876 PP
2zf-B_box21.93.6e-07114156541
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                       C+++  +++   C + ++ lC++C  ++H g       H++++
  ONIVA02G33840.1 114 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 156
                      7*****************************.5588889998876 PP
3CCT64.24e-22417460144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  ONIVA02G33840.1 417 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 460
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-1267114IPR000315B-box-type zinc finger
PROSITE profilePS501199.95467114IPR000315B-box-type zinc finger
CDDcd000219.77E-871114No hitNo description
PROSITE profilePS501199.058110157IPR000315B-box-type zinc finger
CDDcd000218.70E-6114157No hitNo description
SMARTSM003360.24115157IPR000315B-box-type zinc finger
PfamPF062038.6E-17417459IPR010402CCT domain
PROSITE profilePS5101715.408417459IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MLSNSSGSFH GLYQYTYISP TLTKEWKQTH HYPGRIPLNS TVEQKARKVA VLVALSASGS  60
APVLYRTMDA LCDFCGEQRS MVYCRSDAAS LCLSCDRNVH SANALSRRHT RTLLCDRCVG  120
QPAAVRCLEE NTSLCQNCDW NGHGAASSAA GHKRQTINCY SGCPSSAELS RIWSFSMDIP  180
TVAAEPNCEE GINMMSINDN DVNNHCGAPE DGRLLDIAST VLMSDLPTGD KFKPLIGSSS  240
GDGMNLLPLN SDQPAEPVST TPKAPCVTDK DMFNDGSVYG DFCVDDADLT FENYEELFGT  300
SHVQTEQLFD DAGIDSYFEM KDVPADESNE QPKPVQPECS NVASVDSGMS NPAARADSSH  360
CIPGRQAISN ISLSFSGLTG ESSAGDFQDC GVSSMILMGE PPWHPPGPES SSAGGSRDNA  420
LTRYKEKKKR RKFDKKIRYA SRKARADVRK RVKGRFVKAG EAYDYDPLSQ TRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426430KKKRR
2426431KKKRRK
3427431KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0E0GCH30.0A0A0E0GCH3_ORYNI; Uncharacterized protein
STRINGONIVA02G33840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-94CONSTANS-like 9