PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G32560.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 301aa    MW: 31094.9 Da    PI: 5.4689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G32560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09214255955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  ONIVA02G32560.1 214 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 255
                      69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13207265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-12207259No hitNo description
SMARTSM003532.0E-11211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6214255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRMALVRERA MVYGGGFDAE AFGGGFESSQ MGYGHDALLD IDAAALFGGY EAAASAGCAL  60
VQDGAAGWAG AGASSSVLAF DRAAQAEEAE CDAWIEAMDQ SYGAGGEAAP YRSTTTVAFD  120
AATGCFSLTE RATGGGGGEG GRQFGLLFPS TSGGGVSPER AAPAPAPRGS QKRAHAESSQ  180
AMSPSKKQCG AGRKAGKAKS VPTTPTKDPQ SLAAKNRRER ISERLRILQE LVPNGTKVDL  240
VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGKAPEISQV KEALDAILSS SSSPLMGQLM  300
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096620.0AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624282.10.0putative transcription factor bHLH086
TrEMBLA0A0E0GC090.0A0A0E0GC09_ORYNI; Uncharacterized protein
STRINGONIVA02G32560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-43ROOT HAIR DEFECTIVE6