PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G32300.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 398aa    MW: 41195 Da    PI: 7.0259
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G32300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.63.1e-28160213358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++r++eClkNhAa++G+h++DGCgEfm+s+g+   aaal CaACgCHR+FHRre++
  ONIVA02G32300.1 160 TWRHRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAACGCHRSFHRREPA 213
                      6799*************************8887..99****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.0E-24161212IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-9162189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-24163211IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.747163211IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.6E-22311367IPR009057Homeodomain-like
SuperFamilySSF466894.66E-12312367IPR009057Homeodomain-like
TIGRFAMsTIGR015657.9E-20318367IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEED DEEEDEEEQG HHQYTTAAAQ QQLHPQVLGS SASSPSSLMD  60
SAAFSRPLLP PNLSLVSPSA AAAAAPGGSY LHAAHHHGQG RRVEAPGGES QHQLQRHHEP  120
ARNGVLGGVA GAHAASTLAL VGGGGGGPRG GEGAAGEAPT WRHRECLKNH AARMGAHVLD  180
GCGEFMSSPG DGAAALACAA CGCHRSFHRR EPAVVAPASL SLCPASASAS AAAGLVSLSP  240
SATPTGANSS RLMPLLLAPP HMQKRPPVLP VSPASAPAAL AESSSEELRP PPLPSSHPHA  300
HAAAVVAASA SAPPGPSKKR FRTKFTAEQK ERMREFAHRV GWRIHKPDAA AVDAFCAQVG  360
VSRRVLKGGD TSTALAAKPP FLRAFAAFFG GQFCLSCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-163173671666ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4804960.0AF480496.1 Oryza sativa clone BAC 49D11, complete sequence.
GenBankAP0053230.0AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05.
GenBankAP0058440.0AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626824.11e-163zinc-finger homeodomain protein 7
SwissprotQ8S3Q91e-164ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A0E0GBX50.0A0A0E0GBX5_ORYNI; Uncharacterized protein
STRINGONIVA02G32300.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-16homeobox protein 22