PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G31730.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 605aa    MW: 62392.8 Da    PI: 6.8266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G31730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30335393259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  ONIVA02G31730.1 335 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 393
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-31329395IPR003657WRKY domain
PROSITE profilePS5081133.109329395IPR003657WRKY domain
SuperFamilySSF1182904.45E-26332395IPR003657WRKY domain
SMARTSM007741.4E-37334394IPR003657WRKY domain
PfamPF031061.4E-25336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MIHPLISSLP PLHLSFLLFF LSFRTYKTAL SLLSLSLSRL ATILSASIGS AATGWVYPTL  60
YHHQYHCTTT LASVRERERE RERGGGGGGG GGQIIMCDYF LQRMEGEQAA GDLADIVLRA  120
GGAAAAAVAG GGIPSTEWQL PPAEEEEEEP GLFPLPPSSS DGSGMSGADA FGDPFAGLPD  180
PFGGDYPSSS GGAAAAADFF DAVVAKAGFV DVGVLGGGGG GGCDGGGVDG GGGGSSLLGM  240
SKPILPRAAM QLPSVSPRAI RPYPVMAGDT VKLGAPMAGG PCAFDGAAAA GLHMSSSPRG  300
AVGGIKRRKN QARKVVCIPA PAAAGGRTSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC  360
SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA LAGSTRSHHA KNSSSNSSSS  420
GASSASKNNS SHSGYHHHHH QKPLVKAEPN DQSAAAAAAT TAATVPVKEE AAMVGTSSEA  480
LAKTTQKSME DAAAAASATA AAVEHSDLMQ QMFSQSYRPM IPEAAAGGHH DDFFADLAEL  540
ESDPMSLIFS KEYMATNYKP AGDPAGKEMN AVDKGLDPAY MLDWSSTTVV TRAGGSSFMQ  600
GEGGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25309396280Disease resistance protein RRS1
5w3x_D4e-25309396280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731000.0AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624748.10.0probable WRKY transcription factor 14
TrEMBLA0A0E0GBP00.0A0A0E0GBP0_ORYNI; Uncharacterized protein
STRINGONIVA02G31730.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-65WRKY DNA-binding protein 35