PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G30660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 302aa    MW: 31662 Da    PI: 8.2175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G30660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14116167155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  ONIVA02G30660.1 116 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 167
                      79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-15107174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-12114167No hitNo description
Gene3DG3DSA:4.10.280.105.3E-14114170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.142115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEQWAAAAAA ADQAAASAGA GQMPFLALLQ GAMEADGGGG GDGRKRHAAA AAFASCCPCP  60
PVADLDLLES CVTQAAAPPV TAPATRAERR RKRPRPRPRA APPPEKRKKP EEAENQRMTH  120
IAVERNRRRL MNDHLASLRS LIPSNYIPRG DQATVVGGAI DYVKQLEQQL VALQAAAAER  180
SGVGVVATAA TAASDGVFVS PQYTSYSEAR GGSGVDVEAT AAVGGHVRVR VAGRRWTGRL  240
VRAVAAMEDL RLTVLHLAVT SVGHDAVVYC FNLKMEEGCE MATADEVATV VHQIFAYAGA  300
CC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18898RRRKRPRPRPR
29096RKRPRPR
390108RKRPRPRPRAAPPPEKRKK
49195KRPRP
5116127RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.20.0transcription factor bHLH57
SwissprotQ9M1282e-51BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A0E0GB930.0A0A0E0GB93_ORYNI; Uncharacterized protein
STRINGONIVA02G30660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.13e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]