PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G29150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 341aa    MW: 35282.2 Da    PI: 5.5842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G29150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05626323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C+ C ++F ++  L  H+r+H
  ONIVA02G29150.1  6 CKLCYRRFASPRALAGHMRSH 26
                     ********************9 PP
2zf-C2H211.40.00099198220123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  ONIVA02G29150.1 198 FQCPACKKVFRSYQALGGHRASH 220
                      89**********99999998887 PP
3zf-C2H210.90.0014262284123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F +   L  H ++H
  ONIVA02G29150.1 262 HECPYCYRVFASGQALGGHKKSH 284
                      79************999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.14426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139121.2E-4626IPR007087Zinc finger, C2H2
PfamPF139128.6E-11197220IPR007087Zinc finger, C2H2
SMARTSM003550.026198220IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286198220IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7198220No hitNo description
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7257284No hitNo description
SMARTSM003550.39262284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912262284IPR007087Zinc finger, C2H2
PfamPF139129.9E-12262284IPR007087Zinc finger, C2H2
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAKLQISSA SSASTSFTAA  60
DEEEEEEEEE EDVGFKKPLS IYALRENPKR SLRVSEYAFS DRESEAESTP TPAAKGLRAG  120
GGGGGGDGEP MSSLSYAGTP EEEVALALMM LSRDTWPSVE RGGGGGEYSD DGSDDGYALP  180
PPSPAPAPAP VPEKRTRFQC PACKKVFRSY QALGGHRASH VRGGRGGCCA PPVAPPPQPH  240
PQPPLPEHDA GEEDMDGKAP PHECPYCYRV FASGQALGGH KKSHVCSAAA AAAHAQTLGG  300
GAPPPQPKIL GMIDLNFAPP VDEVELSAVS DPHFPSNPPG P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624884.10.0zinc finger protein ZAT1
TrEMBLA0A0E0GAP80.0A0A0E0GAP8_ORYNI; Uncharacterized protein
TrEMBLA2X8030.0A2X803_ORYSI; Uncharacterized protein
STRINGONIVA02G29150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-23C2H2-like zinc finger protein