PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G29140.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 619aa    MW: 65795.6 Da    PI: 6.3981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G29140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05119136219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F+++ +L  H
  ONIVA02G29140.1 119 TCENCGKEFTSWKTLLDH 136
                      6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-53659IPR007087Zinc finger, C2H2
PROSITE profilePS501578.7043759IPR007087Zinc finger, C2H2
SuperFamilySSF576673.88E-63759No hitNo description
SMARTSM003555.23759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SuperFamilySSF576673.88E-6113138No hitNo description
PROSITE profilePS501578.621118145IPR007087Zinc finger, C2H2
SMARTSM00355200118138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.44E-8295318No hitNo description
PROSITE profilePS5015710.201296323IPR007087Zinc finger, C2H2
SMARTSM003550.21296318IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-8296320IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
SuperFamilySSF576679.44E-8427454No hitNo description
PfamPF139121.9E-12431455IPR007087Zinc finger, C2H2
SMARTSM003550.46432454IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349432454IPR007087Zinc finger, C2H2
PROSITE patternPS000280434454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MAMVVAGSHR PPPPPQSLRL VPPPPPQPPP PPLTYRHHCK VCKKGFMCGR ALGGHMRAHG  60
IGDDNDTMDD DDGRDDDHSL SPCDGGGEPS EAAGSPTTTT TKRMYALRTN PGRPRNCRTC  120
ENCGKEFTSW KTLLDHGRCG LDEEDGRLDV SLRSPPLHDG GDENDGEDEE EGDDLTLAAG  180
GWSKGKRSRR AKVMAVGTGS VSELQLPAPS TEEEDLANFL VMLSSSSSTS SRVAQPAIVV  240
DDADQESCAS GSKDEERNRF LVPQPISMAA PMMAQMTVIA PQVVPQHIST VPRGMFECKA  300
CRKVFTSHQA LGGHRASHKK VKGCFAAKLE SSRNETSQTQ TQQQHVSAAP HDNTRATTSH  360
VITSDISMDA NTIGASADAD GKAAASGVGA GEIVLAGASS TDMAMMMSVE DFAPTPLAPS  420
AVSPFKKKGK VHECSICHRV FTSGQALGGH KRCHWLTSGA TDPLTKLQPV AQDHAMMAAM  480
CHQLTLGRPI FDPTDQRILD LNVPTNPLAE AVAARQQQQQ QVAALNDGAL CLNAAASVYL  540
QSWTGHSNGS HVNKTTATSS RLNDAAGGVT TEDDEADSTS AKRAKIGDLK DMKVAGESLP  600
WLQVGIRISS ESKEKNTQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624902.10.0uncharacterized protein LOC4330215
TrEMBLA0A0E0GAP70.0A0A0E0GAP7_ORYNI; Uncharacterized protein
STRINGONIVA02G29140.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.16e-12C2H2-like zinc finger protein