PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G28000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 143aa MW: 15389.6 Da PI: 11.653 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.4 | 1.3e-34 | 18 | 110 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 +k+++++++hTkv+gR+RR+R++a+caa +F+L++eL ++++s+t++WLlqq +pai ++gt +s ++ +c + s s++++++ ONIVA02G28000.1 18 PKRSSNKDRHTKVDGRGRRIRMPALCAAWIFQLTRELDHKSNSETVQWLLQQVEPAIVTAMGTgvgtdiqgPSLPSPNC---ALSRSHHHHHHM 108 6999***********************************************************8888777645555556...333333333333 PP TCP 89 .k 89 + ONIVA02G28000.1 109 wA 110 31 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-26 | 22 | 88 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.414 | 23 | 77 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MQVVAAVTGK RRMQGLGPKR SSNKDRHTKV DGRGRRIRMP ALCAAWIFQL TRELDHKSNS 60 ETVQWLLQQV EPAIVTAMGT GVGTDIQGPS LPSPNCALSR SHHHHHHMWA AAAAPPAASA 120 AFAGATSGSR PCSPATWRQP CRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004133 | 0.0 | AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03. | |||
GenBank | AP004768 | 0.0 | AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624510.2 | 4e-62 | LOW QUALITY PROTEIN: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-33 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0E0GAB4 | 1e-100 | A0A0E0GAB4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G28000.1 | 1e-101 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-34 | TCP family protein |