PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G27180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 735aa MW: 79147.3 Da PI: 7.1332 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.5e-23 | 174 | 275 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + ONIVA02G27180.1 174 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 263 89*****************************96555555..8************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ ONIVA02G27180.1 264 DGGDLHVGIRRA 275 88999*****97 PP | |||||||
2 | Auxin_resp | 116.9 | 1.7e-38 | 325 | 408 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+ ONIVA02G27180.1 325 AARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVASVQVADPIRWPQSPWRLLQ 408 6788999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-37 | 167 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-29 | 170 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.51E-22 | 173 | 274 | No hit | No description |
PROSITE profile | PS50863 | 12.689 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-21 | 174 | 275 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-20 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.2E-33 | 325 | 408 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 14.478 | 649 | 729 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MLPWERQPKA ATTNLSSSPP LPPPHDEHSH GHTTTPARSV AGAAGCGGGG GCVAMITFAD 60 LAEPAPGAER CVDRQLWLAC AGGMCTVPPV GAAVYYFPQG HAEHALGLAA PELSAARVPA 120 LVPCRVASVR YMADPDTDEV FARIRLVPLR AAEDGDVEED GAAAGEEHEK PASFAKTLTQ 180 SDANNGGGFS VPRYCAETIF PRLDYAADPP VQTVVAKDVH GVAWNFRHIY RGTPRRHLLT 240 TGWSTFVNQK KLVAGDSIVF LRGDGGDLHV GIRRAKRGFC GGGGGAEEAS LPGWDQYGGL 300 MRGNASPCAA AKGRGKVRAE DVVEAARLAS GGQPFEVVYY PRASTPEFCV RAAAVRAAMR 360 VQWCPGMRFK MAFETEDSSR ISWFMGTVAS VQVADPIRWP QSPWRLLQVT WDEPDLLQNV 420 KRVSPWLVEL VSSMPAIHLS SFSPPRKKPR IPAYPEFPFE GQLLNPAFPP NPLAHGHHHY 480 HHNHPSFFPF PDVSAPAGIQ GARHAQFGPS LSDLHLTHLQ SSLMYPGLRR PDHVGPTSIP 540 PPRISTDLTM GSSPPARALS MGAKKPDDAK PPGLMLFGQR ILTERQMSLS GTTSPAATGN 600 SSLNWNTEKG ASEGSGSGVI QNSPTDNTSS ERLQWFRENS TVSELGLEPG QCKVFIESDT 660 VGRNLDLSSL ASFEQLYGRL SEMFCIDSAE LRSRVLYRGA TGEVRHAGDE PFSEFIKLAR 720 RLTILTDAGS DNLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-78 | 72 | 429 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243230 | 0.0 | AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622752.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q6K223 | 0.0 | ARFH_ORYSJ; Auxin response factor 8 | ||||
TrEMBL | A0A0E0G9Z9 | 0.0 | A0A0E0G9Z9_ORYNI; Auxin response factor | ||||
STRING | ONIVA02G27180.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |