PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G27180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 735aa    MW: 79147.3 Da    PI: 7.1332
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G27180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23174275199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + 
  ONIVA02G27180.1 174 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 263
                      89*****************************96555555..8************************************************..34 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  ONIVA02G27180.1 264 DGGDLHVGIRRA 275
                      88999*****97 PP

2Auxin_resp116.91.7e-38325408183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ as +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+
  ONIVA02G27180.1 325 AARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVASVQVADPIRWPQSPWRLLQ 408
                      6788999***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-37167277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-29170276IPR015300DNA-binding pseudobarrel domain
CDDcd100176.51E-22173274No hitNo description
PROSITE profilePS5086312.689174276IPR003340B3 DNA binding domain
PfamPF023622.0E-21174275IPR003340B3 DNA binding domain
SMARTSM010192.7E-20174276IPR003340B3 DNA binding domain
PfamPF065075.2E-33325408IPR010525Auxin response factor
PROSITE profilePS5174514.478649729IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MLPWERQPKA ATTNLSSSPP LPPPHDEHSH GHTTTPARSV AGAAGCGGGG GCVAMITFAD  60
LAEPAPGAER CVDRQLWLAC AGGMCTVPPV GAAVYYFPQG HAEHALGLAA PELSAARVPA  120
LVPCRVASVR YMADPDTDEV FARIRLVPLR AAEDGDVEED GAAAGEEHEK PASFAKTLTQ  180
SDANNGGGFS VPRYCAETIF PRLDYAADPP VQTVVAKDVH GVAWNFRHIY RGTPRRHLLT  240
TGWSTFVNQK KLVAGDSIVF LRGDGGDLHV GIRRAKRGFC GGGGGAEEAS LPGWDQYGGL  300
MRGNASPCAA AKGRGKVRAE DVVEAARLAS GGQPFEVVYY PRASTPEFCV RAAAVRAAMR  360
VQWCPGMRFK MAFETEDSSR ISWFMGTVAS VQVADPIRWP QSPWRLLQVT WDEPDLLQNV  420
KRVSPWLVEL VSSMPAIHLS SFSPPRKKPR IPAYPEFPFE GQLLNPAFPP NPLAHGHHHY  480
HHNHPSFFPF PDVSAPAGIQ GARHAQFGPS LSDLHLTHLQ SSLMYPGLRR PDHVGPTSIP  540
PPRISTDLTM GSSPPARALS MGAKKPDDAK PPGLMLFGQR ILTERQMSLS GTTSPAATGN  600
SSLNWNTEKG ASEGSGSGVI QNSPTDNTSS ERLQWFRENS TVSELGLEPG QCKVFIESDT  660
VGRNLDLSSL ASFEQLYGRL SEMFCIDSAE LRSRVLYRGA TGEVRHAGDE PFSEFIKLAR  720
RLTILTDAGS DNLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-787242951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622752.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A0E0G9Z90.0A0A0E0G9Z9_ORYNI; Auxin response factor
STRINGONIVA02G27180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16