PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G26540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 332aa    MW: 34936.9 Da    PI: 4.9272
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G26540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-083067438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     r C+ ++ + ++l+C+ ++ +lC+ C    H g    H 
  ONIVA02G26540.1 30 RACDSCGGEAARLYCRADGAFLCARCDARAH-GagsrHA 67
                     57**************************999.4466675 PP
2zf-B_box22.91.8e-0769113341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  ONIVA02G26540.1  69 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 113
                      679*****************************6688888898877 PP
3CCT70.44.5e-24261304144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++
  ONIVA02G26540.1 261 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 304
                      9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8932771IPR000315B-box-type zinc finger
SMARTSM003365.4E-92771IPR000315B-box-type zinc finger
CDDcd000219.51E-103071No hitNo description
PfamPF006439.0E-73167IPR000315B-box-type zinc finger
PROSITE profilePS5011910.42467114IPR000315B-box-type zinc finger
PfamPF006437.9E-669114IPR000315B-box-type zinc finger
SMARTSM003364.6E-972114IPR000315B-box-type zinc finger
PfamPF062032.7E-18261303IPR010402CCT domain
PROSITE profilePS5101716.916261303IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEAVEDKAMV GVGGAVAAGY SSSSWGLGTR ACDSCGGEAA RLYCRADGAF LCARCDARAH  60
GAGSRHARVW LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGP  120
LADAPQPFPF SQAAADAAAA REEDADDDRS NEAEAASWLL PEPDDNSHED SAAAADAFFA  180
DTGAYLGVDL DFARSMDGIK AIGVPVAPPE LDLTAGSLFY PEHSMAHSLS SSEVAIVPDA  240
LSAGAAAPPM VVVVASKGKE REARLMRYRE KRKNRRFDKT IRYASRKAYA ETRPRIKGRF  300
AKRTADADDD DEAPCSPAFS ALAASDGVVP SF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000970.0AK100097.1 Oryza sativa Japonica Group cDNA clone:J023004D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625855.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0E0G9Q60.0A0A0E0G9Q6_ORYNI; Uncharacterized protein
STRINGONIVA02G26540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.15e-42CONSTANS-like 3