PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G25300.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 380aa MW: 42228.3 Da PI: 5.8549 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.4 | 2.1e-30 | 57 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+P+d el+ e+L++k+ + +e+i+++d i++++P++Lp +k++ ++ +fF++ +++y g+rk+r+ ONIVA02G25300.2 57 LPAGVKFDPSDLELL-EHLEQKIGLGGskphtfI--DEFIPTIDndegICYSHPENLP-GMKKDGTSGHFFHRVSNAYGCGQRKRRKisncdhv 146 799************.99****876654555332..233444433445**********.677888999******************87899998 PP NAM 78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk+k++++ kg ++g kk++v+y ++r k+ k++Wvmh+y+l ONIVA02G25300.2 147 vsVEHVRWHKTGKSKAIVE-KGVTKGWKKIMVLYksSQRGAKPDKANWVMHQYHL 200 887899*************.999***********4435777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-35 | 42 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.869 | 57 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-13 | 58 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MARSWLITGR GVAKKIRNAP HCSSRPISEL GAEAQMECPN CKHVIDNSDV AIQWPGLPAG 60 VKFDPSDLEL LEHLEQKIGL GGSKPHTFID EFIPTIDNDE GICYSHPENL PGMKKDGTSG 120 HFFHRVSNAY GCGQRKRRKI SNCDHVVSVE HVRWHKTGKS KAIVEKGVTK GWKKIMVLYK 180 SSQRGAKPDK ANWVMHQYHL GAEEDEKDGE LVVSKISYQL HGKQIDKFET GNADEESDAF 240 AARVGPKTPK SNTPQPCRLK NSPCETENYD PILEDQDDAG NPAWCAGETQ AAREAVQACP 300 NLDESLRCHE VLDSFYHETL LPSDRPILSQ GGNEILDRNL NAVYGLPDLY NVDLGTPPDF 360 QLADLQFGSQ ESFGNWLDSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121953 | 0.0 | AK121953.1 Oryza sativa Japonica Group cDNA clone:J033107L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624086.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | Q6NQK2 | 3e-80 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0E0G987 | 0.0 | A0A0E0G987_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G25300.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 8e-92 | NAC domain containing protein 44 |