PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G25260.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 339aa    MW: 35337.9 Da    PI: 7.5738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G25260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-1751101155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  ONIVA02G25260.1  51 TRYRGVRRRP-WGRFAAEIRDPA----SkERRWLGTFDTAEQAACAYDVAARAMRG 101
                      68********.**********83....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1051101IPR001471AP2/ERF domain
CDDcd000186.31E-2851110No hitNo description
PROSITE profilePS5103223.18252109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3052109IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2252110IPR016177DNA-binding domain
SMARTSM003801.6E-3452115IPR001471AP2/ERF domain
PRINTSPR003673.7E-95364IPR001471AP2/ERF domain
PRINTSPR003673.7E-97591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDEPANAQLY GHAHAHSHHH RSKRPSPGGG GGGAASLGAD GGGGGGSLSG TRYRGVRRRP  60
WGRFAAEIRD PASKERRWLG TFDTAEQAAC AYDVAARAMR GTRARTNFPV PAAAGFPGGG  120
SGGCWPWVNI PPQGAAAAAS HQQPLNTFLL HNLLMSSSPH GCLLLHHAGH GHGHAHSHSH  180
SHSRAHNPST RPPTSAPPPP PPAAASSATT APATTTGAAA TSAPGADDDA WGFLLRREPP  240
EAGLLQDVLH GFYPTRRPHD DAGPAPKLER PYEATSSYRV SSPWGAVEDC DDGDGDGDDD  300
YRGFPMMPQG LLEDVIQCPP YMEVLAAPSA AVGRVSRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2049115269ATERF1
3gcc_A4e-2049115269ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040230.0AP004023.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1126_D09.
GenBankAP0040790.0AP004079.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1067_B01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624483.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A0E0G9820.0A0A0E0G982_ORYNI; Uncharacterized protein
STRINGONIVA02G25260.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.11e-12ERF family protein