PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G23720.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 504aa    MW: 54469.3 Da    PI: 4.8383
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G23720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3374.22.2e-114813702291
                      XXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn.......ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpv 84 
                      +lkkrmwkdqmll++l++ +    + +       +ga +s+       +++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYg i+e g+p+
  ONIVA02G23720.1  81 DLKKRMWKDQMLLMKLEGGRPGGGGGRGGGglaaAGAGTSSegqleeeTPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGVIDEAGEPM 174
                      9********************9998888766666555555567778879********************************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
             EIN3  85 egasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                      +g+sdsLr+WWk++v+fdr+gp+a++       +++g+s +  ++    h+l+++qD+tlgS+Lsal+qhc+ppqr+fple+g++pPWWPtG+e
  ONIVA02G23720.1 175 SGSSDSLRGWWKDNVSFDRAGPMALIGP-----AAAGDSPQ--AGGGGLHRLQDIQDSTLGSVLSALIQHCEPPQRSFPLERGLAPPWWPTGEE 261
                      **************************99.....34555555..59************************************************* PP

                      HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXX CS
             EIN3 179 lwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqs 271
                       wwg++g ++++qg+ppy+kphdlkkawkvs+L+avikhmsp+++++r+l++qsk+lq+kmsakes+++++v++qee++ ++++++      + 
  ONIVA02G23720.1 262 PWWGTQGeTQAHQGAPPYRKPHDLKKAWKVSLLSAVIKHMSPRFDQMRKLVWQSKRLQQKMSAKESDTWSKVIRQEEALDRRLKTSL-----HI 350
                      ********************************************************************************9999987.....66 PP

                      XXXXXXXXXXXXXXXXXXXX CS
             EIN3 272 pkvtlsceqkedvegkkesk 291
                      + + ++ ++++d++g ++  
  ONIVA02G23720.1 351 TPLDADGGEEDDSDGLEDVV 370
                      78888888888888433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.6E-11781338No hitNo description
Gene3DG3DSA:1.10.3180.103.9E-65216347IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-57216340IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MASRSPTNKQ ISSEDRVRGA RGKRHHHSSD EWSMEHAEEH EHGRGGGERD DAAEPEAEQP  60
ELEQEELSDS ESGAESIEIS DLKKRMWKDQ MLLMKLEGGR PGGGGGRGGG GLAAAGAGTS  120
SEGQLEEETP EARYRRKAML RAQDGVLRHM LKMMEACNAR GFVYGVIDEA GEPMSGSSDS  180
LRGWWKDNVS FDRAGPMALI GPAAAGDSPQ AGGGGLHRLQ DIQDSTLGSV LSALIQHCEP  240
PQRSFPLERG LAPPWWPTGE EPWWGTQGET QAHQGAPPYR KPHDLKKAWK VSLLSAVIKH  300
MSPRFDQMRK LVWQSKRLQQ KMSAKESDTW SKVIRQEEAL DRRLKTSLHI TPLDADGGEE  360
DDSDGLEDVV RGAAAQDKRK REYTRSGSGS SSGNSGGGKF PRGGSGGADH HQLAVMLPEL  420
AAAADQEGRS PINELMKLYY SCLQQEEGAA DGGEAGGEGC DVAAAALAVP PEVLAGVDEV  480
GQDVLFDLIG SYPEVDDVLH FMDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-502173444130Protein ETHYLENE INSENSITIVE 3
4zds_B4e-502173444130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625091.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9FJQ51e-92EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A0E0G8N90.0A0A0E0G8N9_ORYNI; Uncharacterized protein
TrEMBLA2X6C90.0A2X6C9_ORYSI; Uncharacterized protein
STRINGONIVA02G23720.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-78EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]