PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G23040.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 492aa    MW: 51234.2 Da    PI: 5.1858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G23040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12293338555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  ONIVA02G23040.1 293 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 338
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.78E-13286342No hitNo description
SuperFamilySSF474593.53E-17286349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17290348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMATGEETPQ SFGFGSLFNG  180
DLLQEANVSK YHHQQQQQQL GVVPSSQPHH LNEFSSGLHH LNLSSLISGP LASFNATQSH  240
RQPAEACGGK NGGAAPFVNL SEVLPKGNGS GSAGNGAPKP RVRARRGQAT DPHSIAERLR  300
REKISDRMKD LQELVPNSNK TNKASMLDEI IDYVKFLQLQ VKVLSMSRLG AAEAVVPLLT  360
ETQTESPGFL LSPRSSSGER QAGAGAVTGG LPGDQPELLD GGAMFEQEVV KLMEDNMTTA  420
MQYLQSKGLC LMPVALASAI SAQKGTSSAA VRPEKKKNGD GDGGGDEEDV KGEFDAPRRP  480
PVGRPKEMRS RV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLA0A0E0G8F80.0A0A0E0G8F8_ORYNI; Uncharacterized protein
STRINGONIVA02G23040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-56LJRHL1-like 3