PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G22250.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 288aa MW: 31874.2 Da PI: 5.2925

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G22250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.6	9e-23	105	191	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e e+ + +++ + ++trt+Cka+++ + +++g+w+v++l+++HnH+la ONIVA02G22250.1 105 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGERLT--DANFNDPHTRTNCKAMVRFRVNNHGEWKVIRLVSDHNHNLA 191 7*************************************999877..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-20	105	191	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVNTDGEGGC EGGGGDPMCV DDNAIVAVET GVGVDQGIGS QHDDAGGDRV MEGQGAVTNS 60 GDEMGMRAYG DEAETEEAAT VHGSKEGTEE LLRKVVYSEE AAYKLYCDYG HRMGFSIRKG 120 KQSYFTGTKR IRTKDYFCSK EGLKEGERLT DANFNDPHTR TNCKAMVRFR VNNHGEWKVI 180 RLVSDHNHNL ARPEERHLLR SARSLIAGRS SSVETSKQDS LSCYISMART LAIGNADLQN 240 LVRHLKSRAN EDGNEELRKS LWETLESGEK ELEKYLENVT QYALSYAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626433.1	1e-173	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0G826	0.0	A0A0E0G826_ORYNI; Uncharacterized protein
STRING	ONIVA02G22250.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-16	FAR1-related sequence 5