PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G21900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 148aa MW: 16868.4 Da PI: 6.9312 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.4 | 4.7e-08 | 70 | 105 | 1 | 38 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 +fY+ YA++vGFs+r+ ++kk +g + + f C ++ ONIVA02G21900.1 70 EFYECYAHRVGFSIRIGQHKKV--DGVVLYKCFLCANN 105 6*****************9998..9**********875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-5 | 70 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MSMARRLEFD DVHSDAESVT TGVPHRRAQY IKPQKSTSIP FCGSYFVPEC DDSVVPHIGM 60 TFMDVESAKE FYECYAHRVG FSIRIGQHKK VDGVVLYKCF LCANNSLLRF GIGHDGHPLS 120 VLDLAMELYH CEKVFLNISN MVREKVYL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 1e-100 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640678.1 | 2e-50 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0E0G7Y4 | 1e-107 | A0A0E0G7Y4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G21900.1 | 1e-107 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 1e-09 | FAR1-related sequence 12 |