PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G21790.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 527aa    MW: 54400.1 Da    PI: 7.4099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G21790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13252296755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rEr RR+r+N+ f+ +r+l+P++     +K s +ei   A+ YIk+Lq
  ONIVA02G21790.1 252 VRERERRRRMNDMFAGIRRLVPNL----PEKSSRVEIIDGAIAYIKMLQ 296
                      59*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-16243318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.63245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15252316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10253296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-6259299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGVESDGDD DVVIVDACNN GKRKVGDGEE  60
EGRGSQGGDD AGGAGASSSS SSSAAAAAAA ARANTVVPVP QRAARGATAP TPRPVAPPQA  120
GTWPLPARAA APHRRARHGV RRAEEPLSCS LLRCTFACFA TMSQEEQRHG RQLPLATSGV  180
ITFNGVPLSP LTAGVESDGD DDDVVIVDAC NNGKRKVGDG EEEGRGSQGG DDDDDVVAVH  240
GGGGNRACMF AVRERERRRR MNDMFAGIRR LVPNLPEKSS RVEIIDGAIA YIKMLQGEEV  300
RMEAQKQELQ RERDRLAMEV AAAAGGAGAS SSSSSAAAAA VTVAAYGPAG AVGSSSSSAA  360
AAAAAAARAN TVVPVPQRAA RGATPPTPRP VAPPQAGTWP LPAPAAMPPP PPPPTGAAAV  420
APPPSLKTWS WGDNVVVSVL GNIGNMTVRA PLCRTGVLAM ASAALKRYNI TAVTSLSGTD  480
ASRTQNMFMF YTIIDMPDRQ PQFVHPKVFE AMYRAAAAEI AAWINCY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624470.21e-174uncharacterized protein LOC107276567 isoform X1
TrEMBLA0A0E0G7W90.0A0A0E0G7W9_ORYNI; Uncharacterized protein
STRINGONIVA02G21790.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1814277