PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G18700.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 475aa MW: 52785.5 Da PI: 5.0904

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G18700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.4	2.6e-34	22	113	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye+++d++++ ++sws ++ sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF++++F kg+k+ll ONIVA02G18700.1 22 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEYFIKGQKHLL 106 9******************66679************************************999.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k ONIVA02G18700.1 107 KNIHRRK 113 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	5.44E-33	18	112	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.6E-36	18	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.3E-59	18	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.1E-30	22	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.7E-19	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.7E-19	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.7E-19	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MEVAAGARGG GAGGGGGGPA PFLLKTYEMV DDPSTDAVVS WSDASDASFV VWNHPEFAAR 60 LLPAYFKHSN FSSFIRQLNT YGFRKIDPER WEFANEYFIK GQKHLLKNIH RRKPIHSHSH 120 PPGALPDNER AIFEDEIERL SREKSNLQAD LWKSKQQQSG TMNQIEDLER RVLGMEQRQT 180 KMIAFLQQAS KNPQFVNKLV KMAEASSIFT DAFNKKRRLP GLDYSIENTE TTSFYDDHSS 240 TSKQETGNLL NQHFSDKLRL GLCPAMTESN IITLSTQSSN EDNGSPHGKH PECDMMGREC 300 LPLVPQMMEL SDTGTSICPS KSSCFAPPIS DEGLLTCHLS LTLASCSMDV DKSQGLNANG 360 TTIDNPTEAA TATMEKDDTI DRSFDDNQKK SADSRTADAT TPRADARVAS EAPAAPAAVV 420 NDKFWEQFLT ERPGCSETEE ASSGLRTDTS REQMENRQAY DHSRNDREDV EQLKL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MEVAAGARGG GAGGGGGGPA PFLLKTYEMV DDPSTDAVVS WSDASDASFV VWNHPEFAAR  60
LLPAYFKHSN FSSFIRQLNT YGFRKIDPER WEFANEYFIK GQKHLLKNIH RRKPIHSHSH  120
PPGALPDNER AIFEDEIERL SREKSNLQAD LWKSKQQQSG TMNQIEDLER RVLGMEQRQT  180
KMIAFLQQAS KNPQFVNKLV KMAEASSIFT DAFNKKRRLP GLDYSIENTE TTSFYDDHSS  240
TSKQETGNLL NQHFSDKLRL GLCPAMTESN IITLSTQSSN EDNGSPHGKH PECDMMGREC  300
LPLVPQMMEL SDTGTSICPS KSSCFAPPIS DEGLLTCHLS LTLASCSMDV DKSQGLNANG  360
TTIDNPTEAA TATMEKDDTI DRSFDDNQKK SADSRTADAT TPRADARVAS EAPAAPAAVV  420
NDKFWEQFLT ERPGCSETEE ASSGLRTDTS REQMENRQAY DHSRNDREDV EQLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	9	112	17	129	Heat shock factor protein 1
5d5v_B	1e-22	9	112	17	129	Heat shock factor protein 1
5d5v_D	1e-22	9	112	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065643	0.0	AK065643.1 Oryza sativa Japonica Group cDNA clone:J013035J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622576.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A0E0G6U3	0.0	A0A0E0G6U3_ORYNI; Uncharacterized protein
TrEMBL	A2X520	0.0	A2X520_ORYSI; Uncharacterized protein
STRING	ONIVA02G18700.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-108	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]