PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G17190.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 292aa    MW: 32041.7 Da    PI: 7.9981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G17190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-1529126193
                      EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f kvl+psdv+    +lv+p +++ +       + ++ + + +++ed   +g+ W +++  +k+++ + ltkGW  +++++gL++gD+v F+  
  ONIVA02G17190.1  29 FGKVLMPSDVSWDtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVTGKLWLFRY--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFH-- 118
                      6799******977699********9999999976666667777888866677*******..******************************9.. PP

                      SSSEE..E CS
               B3  86 grsefelv 93 
                      ++ +++++
  ONIVA02G17190.1 119 STACGRFF 126
                      44555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1823131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1927131IPR015300DNA-binding pseudobarrel domain
CDDcd100178.74E-1728131No hitNo description
SMARTSM010190.004829132IPR003340B3 DNA binding domain
PfamPF023621.2E-1129127IPR003340B3 DNA binding domain
PROSITE profilePS508639.17830133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV  60
MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFHST  120
ACGRFFICCR CTCMSFLSLP TTSHRIHGSS VLPQPRAAQA AHHPFSGHAT LCLGNKASDH  180
SAPARHATAS LGCAAAQPRQ VPPTPTPRRR RRSMMVHPEP PEHTTDGMPV ILESMALVST  240
PPVAKRVRLF GVYIDVPPLR PGGEATQDFN HDDGVPSVDR NALKRRRAAA DN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.10.0putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B10.0Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLA0A0E0G6A30.0A0A0E0G6A3_ORYNI; Uncharacterized protein
STRINGONIVA02G17190.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181381010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-12B3 family protein