PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G16710.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 395aa    MW: 43291.1 Da    PI: 6.7822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G16710.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.5e-0557141154
                      CHHHHHHHHHHHHHHHH....HHHHHHHCTSCC.C.............................TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriN....safeeLrellPk.as..........................kapskKlsKaeiLekAveYIksL 54 
                      r++ +  rE+ RRdr+N    saf+   +++   ++                           ++ ++++Ka+iL  A++ +k+L
  ONIVA02G16710.2  57 RKVQKADREKMRRDRLNeqgdSAFSPFSTVILAtRCyanvlveiqpeitkqavaplsfpsntDPDRPRNDKATILSDAIQMLKDL 141
                      5677889**********555559**********777*************************6666677***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-85689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.79E-65790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.79E-6120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-8121164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDPRSSQAQE DGFFHPRDGA CPADSRSSRS LVLAPNSRNS FAGGKTECKT QGSIATRKVQ  60
KADREKMRRD RLNEQGDSAF SPFSTVILAT RCYANVLVEI QPEITKQAVA PLSFPSNTDP  120
DRPRNDKATI LSDAIQMLKD LTSQVNKLKA EYTSLSEEAR ELTQEKNELR DEKVSLKFEV  180
DNLNTQYQQR MRVLYPWTGM EPSVVIGPPL PYPFSVPVPV PVPIPSGAVP MHPQLQAYPY  240
FRNQTSGTVS NPCTPYMAYT QPIHPPTDQL SNQFSAPVQH SSSNQSHSMA QDSRSKSSAL  300
QQVSCRGKHD DFDDVATDLE LKTPGSSAPL QSEIANKDSS SDLKKKKQFI QETKGSSLTE  360
GSSSSSRCSS SGPPDVSNSI EGGSVADDQR STVQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0697900.0AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence.
GenBankAK1039860.0AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626280.10.0transcription factor bHLH121 isoform X1
TrEMBLA0A0E0G6310.0A0A0E0G631_ORYNI; Uncharacterized protein
STRINGONIVA02G16710.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-51bHLH family protein