PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G16710.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 378aa    MW: 41477 Da    PI: 5.9982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G16710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.4e-0540124154
                      CHHHHHHHHHHHHHHHH....HHHHHHHCTSCC.C.............................TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriN....safeeLrellPk.as..........................kapskKlsKaeiLekAveYIksL 54 
                      r++ +  rE+ RRdr+N    saf+   +++   ++                           ++ ++++Ka+iL  A++ +k+L
  ONIVA02G16710.1  40 RKVQKADREKMRRDRLNeqgdSAFSPFSTVILAtRCyanvlveiqpeitkqavaplsfpsntDPDRPRNDKATILSDAIQMLKDL 124
                      5677889**********555559**********777*************************6666677***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-83972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.5E-64073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.5E-6103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-8104147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATR KVQKADREKM RRDRLNEQGD  60
SAFSPFSTVI LATRCYANVL VEIQPEITKQ AVAPLSFPSN TDPDRPRNDK ATILSDAIQM  120
LKDLTSQVNK LKAEYTSLSE EARELTQEKN ELRDEKVSLK FEVDNLNTQY QQRMRVLYPW  180
TGMEPSVVIG PPLPYPFSVP VPVPVPIPSG AVPMHPQLQA YPYFRNQTSG TVSNPCTPYM  240
AYTQPIHPPT DQLSNQFSAP VQHSSSNQSH SMAQDSRSKS SALQQVSCRG KHDDFDDVAT  300
DLELKTPGSS APLQSEIANK DSSSDLKKKK QFIQETKGSS LTEGSSSSSR CSSSGPPDVS  360
NSIEGGSVAD DQRSTVQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0697900.0AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence.
GenBankAK1039860.0AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626280.10.0transcription factor bHLH121 isoform X1
TrEMBLA0A0E0G6300.0A0A0E0G630_ORYNI; Uncharacterized protein
STRINGONIVA02G16710.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.17e-52bHLH family protein