PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G15910.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 413aa MW: 44666.3 Da PI: 6.6338

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G15910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	236	291	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ ONIVA02G15910.1 236 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 291 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.508	233	293	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-17	234	294	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-28	234	294	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-27	236	291	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-6	238	289	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MEVDHADRDG ARRRCREYLL ALEEERRKIQ VFQRELPLCF DLVTQTIEGM RSQMDAAGSE 60 ETVSDQGPPP VLEEFIPLKP SLSLSSSEEE STHADAAKSG KKEEAETSER HSSPPPPPPP 120 EAKKVTPDWL QSVQLWSQEE PQQPSSPSPT STKDLPCKPV ALNARKAGGA FQPFEKEKRA 180 ELPASSTTAA ASSTVVGDSG DKPTDDDTEK HMETDKDNDK DAKDKDKEGQ SQPHRKPRRC 240 WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSSTGQ 300 SSAAAGVPAP PAPQFVVVGS IWVPPPEYAA AAAAQQHVQL AAAGNNASGS ANPVYAPVAM 360 LPAGLQPHSH RKQHQQQQQG QRHSGSEGRR SGDAGDGSSS SPAVSSSSQT TSA

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MEVDHADRDG ARRRCREYLL ALEEERRKIQ VFQRELPLCF DLVTQTIEGM RSQMDAAGSE  60
ETVSDQGPPP VLEEFIPLKP SLSLSSSEEE STHADAAKSG KKEEAETSER HSSPPPPPPP  120
EAKKVTPDWL QSVQLWSQEE PQQPSSPSPT STKDLPCKPV ALNARKAGGA FQPFEKEKRA  180
ELPASSTTAA ASSTVVGDSG DKPTDDDTEK HMETDKDNDK DAKDKDKEGQ SQPHRKPRRC  240
WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSSTGQ  300
SSAAAGVPAP PAPQFVVVGS IWVPPPEYAA AAAAQQHVQL AAAGNNASGS ANPVYAPVAM  360
LPAGLQPHSH RKQHQQQQQG QRHSGSEGRR SGDAGDGSSS SPAVSSSSQT TSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-12	236	289	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831013	0.0	CT831013.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623779.1	0.0	transcription factor NIGT1
Swissprot	Q6Z869	0.0	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0E0G5S6	0.0	A0A0E0G5S6_ORYNI; Uncharacterized protein
STRING	ONIVA02G15910.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	4e-57	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]