PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G12460.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 412aa    MW: 42022.6 Da    PI: 7.826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G12460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13128178255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  ONIVA02G12460.1 128 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 178
                      789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.44E-14124182No hitNo description
PROSITE profilePS5088815.237126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17126201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-13128189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MADGGGGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA  60
AAASTGAGGG ARTTTTTTAA NGRRREGRDE EKGGGGGGGP PAQKKQKGSS SSPAALAAAV  120
GDGDGAAKMS HITVERNRRK QMNEHLAVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV  180
LRSLEAKKNR KAYADQVLSP RPSPAAAALM VKPTPPISPR FAAAAAAGVP ISPRTPTPGS  240
PYNKHAAAAA TARPPHPAAA TSSCSVAYSM SPAMTPTSSS STTTTTTHEL SPAPAFLPIL  300
DSLVTELAAR GGASCRPLVI PSSAAAIAGI VGVPDVRVEF AGPNLVLKTV SHRAPGQALK  360
IIAALESLSL EILHVSICTV DDATVLSFTI KIGIECELSA EELVQEIQQT FL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182106RRREGRDEEKGGGGGGGPPAQKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624375.20.0transcription factor SPEECHLESS
TrEMBLA0A0E0G4J70.0A0A0E0G4J7_ORYNI; Uncharacterized protein
STRINGONIVA02G12460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-41bHLH family protein